Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30719
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1022| Best HMM Match : EspF (HMM E-Value=0.51)                      31   1.1  
SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_1022| Best HMM Match : EspF (HMM E-Value=0.51)
          Length = 310

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 671 NLVKKNLIGEILPPNLVIKMGLAKYEEPPSLLMLQL 564
           NL++ +L G  +PP L I+  LA +  PP L+  QL
Sbjct: 16  NLIRDHLAGHRIPPQL-IRAQLAGHRVPPQLIRAQL 50


>SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 101 IKKETDDPVVHVIDATTLTRNHCPXXXXXXXPISLHPTSLASLKTPTTLHL 253
           I+  T+D +  V+D +    N  P       P   H +S A   TPT+ H+
Sbjct: 105 IRTRTEDDIAKVLDCSKFRLNPVPPSLDQLLPDVHHDSSSAISATPTSNHI 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,869
Number of Sequences: 59808
Number of extensions: 388238
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)