Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30719
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    28   7.0  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      28   7.0  
Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical
           protein K09H9.7 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 529 YNFIEISGHYSKDWGRPRKLREHVTNPN*YTHMINH 422
           YN   ISG +S    R  K  ++VT PN Y HM  H
Sbjct: 69  YNSATISGIFSAFSVRCCKCSDNVTIPNLYKHMKQH 104


>AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical
           protein Y41D4A.7 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 9   QRRERTQRLHPRPTGPLARLAS 74
           QRR+   +LHP P  PL R+AS
Sbjct: 101 QRRKSQAKLHPLPDRPLRRVAS 122


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = -2

Query: 568 NCTDFKN-NLLSNEYNFIEISGHYSKDW--GRPRKLREHVTNPN*YTHMINHTAL*LVEF 398
           +C D K+    S  +N  +   H SKD    RP  +R +  NPN       +    L E 
Sbjct: 157 DCLDEKSFECRSISFNRTDGGCHMSKDSQISRPEAIRLN-NNPNYRIDYYENNCYNLSES 215

Query: 397 YIT*HNVNDR-LGATYSSVVRQSLDKFTLYTLVTCRTDTKYFTRLYECYQMQ 245
           +   H   D  +  +  S +  +   + LY   TCRT+ K  T     +  Q
Sbjct: 216 FTFKHECRDNGISVSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQ 267


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = -2

Query: 568 NCTDFKN-NLLSNEYNFIEISGHYSKDW--GRPRKLREHVTNPN*YTHMINHTAL*LVEF 398
           +C D K+    S  +N  +   H SKD    RP  +R +  NPN       +    L E 
Sbjct: 157 DCLDEKSFECRSISFNRTDGGCHMSKDSQISRPEAIRLN-NNPNYRIDYYENNCYNLSES 215

Query: 397 YIT*HNVNDR-LGATYSSVVRQSLDKFTLYTLVTCRTDTKYFTRLYECYQMQ 245
           +   H   D  +  +  S +  +   + LY   TCRT+ K  T     +  Q
Sbjct: 216 FTFKHECRDNGISVSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQ 267


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = -2

Query: 568 NCTDFKN-NLLSNEYNFIEISGHYSKDW--GRPRKLREHVTNPN*YTHMINHTAL*LVEF 398
           +C D K+    S  +N  +   H SKD    RP  +R +  NPN       +    L E 
Sbjct: 157 DCLDEKSFECRSISFNRTDGGCHMSKDSQISRPEAIRLN-NNPNYRIDYYENNCYNLSES 215

Query: 397 YIT*HNVNDR-LGATYSSVVRQSLDKFTLYTLVTCRTDTKYFTRLYECYQMQ 245
           +   H   D  +  +  S +  +   + LY   TCRT+ K  T     +  Q
Sbjct: 216 FTFKHECRDNGISVSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQ 267


>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/64 (26%), Positives = 22/64 (34%)
 Frame = +1

Query: 298 K*PECKV*IYRVTDARRNCTWHRDDRLHCAM*YRTRLIIVRCGLSYVYIN*GLLHAHAAF 477
           K P C       TD   N   + D    C M       I RC ++Y+Y      H    F
Sbjct: 191 KKPCCPDVFVASTDFAENPVGYSDSFNACEMRANQETYITRCEMTYIYFRQSAKHDKLIF 250

Query: 478 EVCP 489
            + P
Sbjct: 251 RIKP 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,100
Number of Sequences: 27780
Number of extensions: 294247
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)