Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30719
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    30   1.2  
At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    29   2.1  
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (...    29   2.8  
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (...    29   2.8  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    28   6.5  
At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containi...    27   8.6  

>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 523 FIEISGHYSKDWGRPRKLREHVTNPN*YTHMINHTAL*LVEFY 395
           F+   G+ S+ W     LR H+TNP     + +H  L  VEF+
Sbjct: 93  FLSSGGYSSEAWSYVLSLRNHLTNPRFRITIEHHGDLESVEFW 135


>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +2

Query: 416 CGVVYHMCILIRVCYMLTQLSRSAPVFTVVT 508
           C V++H+ I++ + ++L+ L+RS  VF V++
Sbjct: 3   CSVIHHVVIVLLLLWVLSYLNRSHAVFYVLS 33


>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 639

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 142 VDHVNDWVVRFFLDRALRNLSCA 74
           V+HVN+WV R + D+ LR LS A
Sbjct: 508 VNHVNNWVTRAYCDKVLR-LSAA 529


>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 808

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 142 VDHVNDWVVRFFLDRALRNLSCA 74
           V+HVN+WV R + D+ LR LS A
Sbjct: 508 VNHVNNWVTRAYCDKVLR-LSAA 529


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 374 RSSRCHVQFRRASVTR*IYTLHSGHLQNGHKIFHT-SIRVLSDAASSASSRKLNLLDATK 198
           RSSR  +       T   Y  HS H    H + H   +R  +++ SS+SS    LLD  +
Sbjct: 124 RSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSS-SSQLLDHNQ 182

Query: 197 LG 192
           +G
Sbjct: 183 MG 184


>At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 661

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 224 SLKTPTTLHLITLV*TCEIFCVRSASDQSVKCKFIE*LTHDG 349
           SL  P +LH  TLV  C I     A+D +V C  I+  T  G
Sbjct: 423 SLSLPESLHSCTLVHCCAIKS-GYAADVAVSCSLIDAYTKSG 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,817
Number of Sequences: 28952
Number of extensions: 265649
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)