Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30717
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 103 3e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 102 6e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.39
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.6
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.6
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 26 6.3
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.4
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.4
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 8.4
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (247), Expect = 3e-23
Identities = 46/88 (52%), Positives = 68/88 (77%)
Frame = +1
Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
F +++L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
GFT + + +KT YAQ +Q+RAIR+KM
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168
Score = 89.4 bits (212), Expect = 5e-19
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +2
Query: 53 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 233 ERSFRK 250
E +FRK
Sbjct: 78 EHAFRK 83
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 510 IITRDVTNSELREVVNKLIPDSIAKDI 590
+I ++ +RE+V KLIP+ I ++I
Sbjct: 171 VIQNQTSSCSMRELVQKLIPEVIGREI 197
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 102 bits (244), Expect = 6e-23
Identities = 45/88 (51%), Positives = 67/88 (76%)
Frame = +1
Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
F +++L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
GFT++ +KT YAQ +Q+RAI +KM
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168
Score = 92.3 bits (219), Expect = 6e-20
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +2
Query: 53 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 233 ERSFRK 250
E SFRK
Sbjct: 78 EHSFRK 83
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 414 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV*IITRDVTNSELREVVNKL 563
LHW+ L+ +Q + P H+GQ S + NV + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 259 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 390
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 354 LPFFNHPPELIGCEVHAVEVAEHITS 277
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 634 NQSRQRLDAHGRPSRMSLAMESGINLFTTSLSSELVTSRVMI 509
N +R G PS ++ +E+GI +SLS++ ++ + I
Sbjct: 175 NWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQI 216
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 331 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 468
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 310 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 408
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 299 KLQSTLRPCTYSAIN*ICGKTFPRQCQLVDQP 204
KL STLR Y+AIN P Q + VD P
Sbjct: 117 KLDSTLRVLDYNAINKFSIDLTPVQRKHVDMP 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,898
Number of Sequences: 5004
Number of extensions: 66368
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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