Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30717
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 127 1e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 125 3e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 124 5e-29
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 31 0.71
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 31 0.94
03_02_0593 + 9693125-9693127,9693632-9693733,9694020-9694135,969... 30 2.2
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 29 5.0
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.6
12_01_0060 - 499291-501228 28 8.7
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 127 bits (306), Expect = 1e-29
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 1e-21
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 125 bits (302), Expect = 3e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +++L AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 124 bits (300), Expect = 5e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 656 TLSLFGCKPIAPEVRCPWQAFSNVLGNGVRNQLVHHLP 543
T+ L G P+ R W+A V+G GV NQL H LP
Sbjct: 21 TVDLHG-NPVLRSKRGGWKACGFVVGKGVVNQLEHGLP 57
>08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 435 GLLEPTQDVLRPAHSGQSNQKENV*IITRDVTNSELREVVNKLIPDSIAKDIREGLPWAS 614
GL+ P ++ A + Q Q + R TN R +V +IP+S + + EGL W
Sbjct: 1362 GLILPVWGIVEKALAKQVRQIHKRIRVARLETNDNER-IVGLMIPNSAVESVLEGLQWVQ 1420
Query: 615 NL 620
++
Sbjct: 1421 DI 1422
>03_02_0593 +
9693125-9693127,9693632-9693733,9694020-9694135,
9694235-9694357,9694448-9694505,9694733-9694771
Length = 146
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 KIASEGLKGRVFEVSLADLQADTDAERSFR--KFN*SPNMCKDVMCSATSTAWTSQPISS 331
K + K R LA AD DA++ R +F S N+ K + A SS
Sbjct: 62 KAEEQKRKSRAERFGLASSSADEDAKKKARLERFGQSTNVDKGEEEKRKARALRFAETSS 121
Query: 332 GGWLKNGRLSSKP 370
G +NG+ SSKP
Sbjct: 122 GPSQENGKDSSKP 134
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 334 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCES 513
W++++W+ + T+G L V G +Q+ ++ + I KK E
Sbjct: 535 WIMEQWENNYYISAIAGATNGSSLVVMSKG----TPYTQQSYKVSESFPFKWINKKWKEG 590
Query: 514 LHATSLTLNSGRW 552
H TS+T RW
Sbjct: 591 FHVTSMTTAGSRW 603
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 290 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 379
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>12_01_0060 - 499291-501228
Length = 645
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/83 (32%), Positives = 36/83 (43%)
Frame = -2
Query: 551 HLPEFRVSDVACNDSHIFFLIALT*VCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSM 372
HL R+ + N SH+ F IAL H LR E L + ++ T P V+ TS+
Sbjct: 55 HLHALRLHCLLPNPSHLTFPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVL-TSL 112
Query: 371 LASMRVCHFLTIHLSLSVVRSMP 303
L C L H + V MP
Sbjct: 113 LTLYARCGLL--HRAQRVFDEMP 133
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 199 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 107
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,344,804
Number of Sequences: 37544
Number of extensions: 463253
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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