Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30717
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   142   1e-35
DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domai...    25   1.8  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  142 bits (343), Expect = 1e-35
 Identities = 64/88 (72%), Positives = 76/88 (86%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +L+AE V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCI
Sbjct: 84  FRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCI 143

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
           GFT KDS+SQRKTCYAQH+Q++ IR KM
Sbjct: 144 GFTIKDSMSQRKTCYAQHSQIKNIRAKM 171



 Score =  123 bits (297), Expect = 5e-30
 Identities = 57/67 (85%), Positives = 61/67 (91%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80

Query: 233 ERSFRKF 253
           ERSFRKF
Sbjct: 81  ERSFRKF 87



 Score = 43.6 bits (98), Expect = 6e-06
 Identities = 31/68 (45%), Positives = 41/68 (60%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIREGLPWASNLWRDWFASEK*KCLKEGPRFSRSR 689
           II R++T+++L+ VV KL+PDSIAKDI +       L  D +   K K LK+ PRF  S 
Sbjct: 174 IIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPL-HDVYI-RKVKVLKK-PRFDLSS 230

Query: 690 NFDWELHG 713
               ELHG
Sbjct: 231 LM--ELHG 236


>DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 122

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 284 LRPCTYSAIN*ICGKTFPRQ 225
           +RP TY  IN ICG+ + R+
Sbjct: 77  VRPDTYFRINCICGEEYDRE 96


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,786
Number of Sequences: 2352
Number of extensions: 16372
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)