Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30717
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 64  WVDNLLLNTFFTALRQAFIF 5
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 64  WVDNLLLNTFFTALRQAFIF 5
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 261 D*LNLRKDLSASVSACRSARE 199
           D LNLR D+S+S S+  S+ E
Sbjct: 363 DILNLRTDISSSSSSISSSEE 383


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  QGSVYVQQEASRHH--ACQPYPGNENCFG 171
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 676 FRDLEILIGNFTAEG 720
           F+D EILIGN   EG
Sbjct: 369 FKDTEILIGNNENEG 383


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 676 FRDLEILIGNFTAEG 720
           F+D EILIGN   EG
Sbjct: 369 FKDTEILIGNNENEG 383


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -3

Query: 685 DLEKRGPSFKHFHFSDANQSRQRLDAHGRPSRMSLAMESGINLFT 551
           D EKR   F+       +  R R+  HG   +   A   G N  T
Sbjct: 234 DYEKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSST 278


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -3

Query: 685 DLEKRGPSFKHFHFSDANQSRQRLDAHGRPSRMSLAMESGINLFT 551
           D EKR   F+       +  R R+  HG   +   A   G N  T
Sbjct: 234 DYEKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSST 278


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 702 ELHGRRRWK 728
           EL GRRRWK
Sbjct: 39  ELMGRRRWK 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,109
Number of Sequences: 438
Number of extensions: 4574
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)