Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30715
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.5  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   6.0  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   7.9  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 358 LFYRVGDVLFDGVGNRNFLNDSY 290
           L  +VGD  F  VGN N LN +Y
Sbjct: 38  LIEKVGDETFRWVGNENELNGAY 60


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 499 QYMSQLTDPSPVKVYVPEPLPPL-KRKFMFQSKCTCPLPLPQLGGKKSTFTPLKGFPVTM 675
           +++ +++  SP  + +P     L  ++ +  +K  C + +  LGG  + F PL+   +T+
Sbjct: 83  KHLKRVSLQSPYSLLLPYSKESLDSQELVHSAKQNCDVEVVYLGGSFNAFPPLQNDRITV 142

Query: 676 L 678
           +
Sbjct: 143 V 143


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 358 LFYRVGDVLFDGVGNRNFLNDSY 290
           L  +VGD  F  VGN N LN +Y
Sbjct: 37  LIEKVGDEKFRWVGNTNELNGAY 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,874
Number of Sequences: 5004
Number of extensions: 39538
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)