Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30715
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0978 - 23249617-23249679,23250681-23250926 32 0.50
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 30 2.0
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 3.5
02_04_0192 + 20795659-20796309 29 3.5
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 4.7
10_01_0193 - 2127691-2127834,2128175-2128244,2128463-2128561,212... 28 6.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 6.2
09_04_0430 + 17502387-17503505 28 8.2
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 8.2
>08_02_0978 - 23249617-23249679,23250681-23250926
Length = 102
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +1
Query: 553 PLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLKGFPVTMLPCFL*PR 699
PLPPL S PLPLP +PL TML F+ PR
Sbjct: 43 PLPPLLAAAEGPSAAADPLPLPSSRASHQLASPLHPHVATMLSEFMAPR 91
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 325 RRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQY 504
R++ P P +K P P +A++ T PS + G+SS + L S+++ +
Sbjct: 160 RKEPAPKPAKKVVPRPENAAKASTGAGVNENKKPSESEGAGSSSGGSALKYSRKKVVNTL 219
Query: 505 MSQLT 519
S LT
Sbjct: 220 TSVLT 224
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 316 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 441
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>02_04_0192 + 20795659-20796309
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Frame = +1
Query: 343 LPGRKENPLPRESARSPTLPRCQTCPL-PS*RDCQGTSSRTATLTQSKRRCLTQYMSQLT 519
+P P P A + T R + L PS G+SS ++ S ++ T
Sbjct: 1 MPSSSSPPPPPPPATTATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFVSFLPPPT 60
Query: 520 DPSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLKG 660
PSP ++P PL F ++ + P P + S+ P G
Sbjct: 61 SPSPFHRFLPSPLRASSVPFSWEHRPGIP-KTPARSSRSSSKQPPPG 106
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 265 RARGGPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RD 438
R R +R R S PRR P G++ NP P RSP P+ + P P D
Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDND 263
>10_01_0193 -
2127691-2127834,2128175-2128244,2128463-2128561,
2128676-2128811,2128889-2128973
Length = 177
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 569 FNGGKGSGTYTLTGDGSVNWDMYWVRHLLFDWVRVAVREL 450
FN S + G GS W WVRH F WV RE+
Sbjct: 39 FNKEMTSHGAQVDGGGSDWWSNRWVRH--FGWVAKTFREM 76
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 322 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 423
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +1
Query: 328 RKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYM 507
R HP P + P P+ + PT PR P P Q T R A + +R Q
Sbjct: 155 RAYHP-PAPMQQPQPQPPPQ-PTPPRAAPLPTPPRAPPQSTPPRAAPQSTPPQRVAPQPP 212
Query: 508 SQLTDPSPVKVYVPEP 555
+ P V P P
Sbjct: 213 ATAAAPPIEPVAPPSP 228
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 340 PLPGRKENPLPRESARSPTLPRCQTCPLP 426
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,081
Number of Sequences: 37544
Number of extensions: 355701
Number of successful extensions: 1234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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