Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30715
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7) 35 0.073
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 31 1.2
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 4.8
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 29 4.8
SB_18008| Best HMM Match : Drf_FH1 (HMM E-Value=7.7) 28 6.3
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 8.4
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 8.4
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 28 8.4
SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06) 28 8.4
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 8.4
>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
Length = 412
Score = 34.7 bits (76), Expect = 0.073
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Frame = +1
Query: 370 PRESARSPTLPR-CQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYV 546
PR S PTLP Q C R C +S A + +C Y ++D P Y
Sbjct: 244 PRPSRPKPTLPPFAQKCK-EQLRRCMNRTSDAAF----RNKCYKAYRKCMSDNRPKPSYR 298
Query: 547 PEPLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLKGF 663
P P P F KC L + L G F LK F
Sbjct: 299 PRPSRPKPTLPPFAEKCRMELKV-CLNGSSGGFDRLKCF 336
Score = 31.5 bits (68), Expect = 0.68
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 370 PRESARSPTLPR-CQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYV 546
PR S PTLP Q C R C +S A + +C Y ++D P Y
Sbjct: 134 PRPSRPKPTLPPFAQKCK-EQLRRCMNRTSDAAV----RNKCYEAYRKCMSDNRPKPSYR 188
Query: 547 PEPLPPLKRKFMFQSKC 597
P P P F KC
Sbjct: 189 PRPSRPKPTLPPFAQKC 205
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 370 PRESARSPTLPR-CQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYV 546
PR S PTLP Q C R C +S A + +C Y ++D P Y
Sbjct: 79 PRPSRPKPTLPPFAQKCK-EQLRRCMNRTSDAAF----RNKCYEAYWKCMSDNRPKPSYR 133
Query: 547 PEPLPPLKRKFMFQSKC 597
P P P F KC
Sbjct: 134 PRPSRPKPTLPPFAQKC 150
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 370 PRESARSPTLPR-CQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYV 546
PR S PTLP Q C R C +S A + +C Y ++D P Y
Sbjct: 189 PRPSRPKPTLPPFAQKCK-EQLRRCMNRTSDAAF----RNKCYKAYWKCMSDNRPKPSYR 243
Query: 547 PEPLPPLKRKFMFQSKC 597
P P P F KC
Sbjct: 244 PRPSRPKPTLPPFAQKC 260
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/91 (28%), Positives = 38/91 (41%)
Frame = +1
Query: 304 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSK 483
+++ +LP K + LP S + PT P+ T PS + T TATL +K
Sbjct: 240 QTTTTLPSTKQPTTTQQTTTTLP--STKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTK 297
Query: 484 RRCLTQYMSQLTDPSPVKVYVPEPLPPLKRK 576
+ TQ Q T P P + P R+
Sbjct: 298 QPTTTQ---QTTATLPTPSTKPTTVSPTTRQ 325
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = -2
Query: 428 LGKGHV*QRGRVGERALSRGRGFSFLPGRGCAFRRGR 318
L KG V +GR+G R RGRG + PGRG RGR
Sbjct: 83 LNKGSV--QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 412 FDNGVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 314
FD+G+G+G H H YRV DV +DG G+
Sbjct: 793 FDDGIGVGIAHNH-------YRVSDVDYDGAGS 818
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 310 SCSLPR--RKAHPLPGRKENPLPRESARSPTLPRCQT 414
+C LPR R + P PGR NP R + +P C T
Sbjct: 4 TCYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCAT 40
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +1
Query: 274 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 453
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 1450
Query: 454 SRTATL 471
++ + L
Sbjct: 1451 AKPSKL 1456
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +1
Query: 274 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 453
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 321
Query: 454 SRTATL 471
++ + L
Sbjct: 322 AKPSKL 327
>SB_18008| Best HMM Match : Drf_FH1 (HMM E-Value=7.7)
Length = 339
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 532 VKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLK-GFPVTMLP 681
VKV+V P+P L + + K P+P L + S L+ +P+ LP
Sbjct: 145 VKVHVAYPMPSLPLRVSYTVKVRVAYPMPSLPLRLSYTVKLRVAYPMPSLP 195
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 322 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLP 426
P + HP PG P+ + +P +PR T PLP
Sbjct: 141 PSFQDHPGPGVMPQMPPQMAPGTPLMPRIPTPPLP 175
>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 412
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 523 PSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLKGFP 666
P P+ Y P P PP M+ P +P+ K TP KG P
Sbjct: 179 PPPLNPYQPPPFPP--PHLMYPQPTAPPAAIPR--AKAKVQTPRKGAP 222
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +1
Query: 310 SCSLPRRKAHPLPGRKENPLPRESARSPTLP---RCQTCPLPS*RDCQGTSSRTATLTQS 480
S +PRR L +E P PR+S RS +LP +T L S + + S L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLALFS--NGEHAKSFPLRLDAP 428
Query: 481 KRRCLTQYMSQLTDPSPVKVYVPEPLPPLKRK 576
K + + S +++ P+P+P K K
Sbjct: 429 KPVAIDKNQSGKXXXXQLRLDAPKPVPSTKTK 460
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 461 PQPLPSRKEGALPSTCPS*QTRP 529
P PLP R GA PS P +TRP
Sbjct: 856 PPPLPPRPVGAPPSLPPRPRTRP 878
>SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)
Length = 673
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 390 PNPTPLSNMSLTQLKRLSRYQF 455
PNP P +NM+ +LK RY++
Sbjct: 524 PNPCPSTNMTCVELKGTPRYRY 545
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 322 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQ--GTSSRTATLTQSKRRC 492
PR + P PG P P ++SP P C P P+ ++ T ++ ATL ++ C
Sbjct: 26 PRSNSTPSPGI---PSPFPPSKSPDSPYCMEPPKPTPKESMRGKTLAKKATLKKATGSC 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,632
Number of Sequences: 59808
Number of extensions: 334241
Number of successful extensions: 1040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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