Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30715
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    35   0.064
AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical ...    31   0.79 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.8  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    29   4.2  
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    29   4.2  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 24/116 (20%), Positives = 43/116 (37%)
 Frame = +1

Query: 319 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLT 498
           +P  K+ P P  K  P P+   +S         P+P  +       +   + + K +   
Sbjct: 1   MPEPKSKPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPK--- 57

Query: 499 QYMSQLTDPSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKKSTFTPLKGFP 666
            +   +  P P+  + P+P P   +  +F      P P+P+   K   F     FP
Sbjct: 58  PFPKPMLFPKPMPKHKPKPFP---KPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFP 110



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
 Frame = +1

Query: 322 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLT- 498
           P+ K  P+P  K  P P+       +P+ +  P P              + +SK +    
Sbjct: 44  PKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPF 103

Query: 499 QYMSQLTDPSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLP 618
                   P P+  + P+P P   +  +F      P P+P
Sbjct: 104 PNPMPFPKPKPMPKHKPKPFP---KPMLFPKPMPIPKPMP 140



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
 Frame = +1

Query: 319 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLT 498
           +P  K  P+P  K  P P+       +P  +  P P              + +SK +   
Sbjct: 107 MPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKS-E 165

Query: 499 QYMSQLTDPSPVKVYVPEPLP-PLKRKFMFQSKCTCPLPLP 618
            + + +  P P+    P+P P P  +   F      P P+P
Sbjct: 166 PFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMP 206


>AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.8 protein.
          Length = 814

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 433 RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYVPEPLPPL 567
           R+ +   S+T  + +SKR+C+ +      DP+ +KV  P P P L
Sbjct: 57  RELKEEGSQTEDIAKSKRKCVEKQ-----DPAEIKVSAPRPTPSL 96


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
            protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 373  RESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYVPE 552
            R S RSP  P  +T   PS    +    +T+   ++        +    +P+PV   +P 
Sbjct: 898  RRSPRSPRSPDRRTRRSPSYEREEPPVKKTSVEEETVSSTTLDELKPSVEPTPVPAPIPA 957

Query: 553  PLPPLK 570
            P P LK
Sbjct: 958  PAPELK 963


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = +1

Query: 316 SLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSR-TATLTQSKRRC 492
           S+  R+   L     N L R S+ +P+L         S R     + R T ++  +K R 
Sbjct: 391 SIRYRRRQQLEDEAWNRL-RNSSAAPSLLTTSVTADSSSRTSPWAADRVTRSVEPTKSRP 449

Query: 493 LTQYMSQLTDPSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKK 636
            +  +     P  V      PLPP   + + +++   P PLPQL  +K
Sbjct: 450 TSLIVPNTETPRTVSPASKPPLPPQSVERVERTEDASPAPLPQLPIRK 497


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = +1

Query: 316 SLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSR-TATLTQSKRRC 492
           S+  R+   L     N L R S+ +P+L         S R     + R T ++  +K R 
Sbjct: 391 SIRYRRRQQLEDEAWNRL-RNSSAAPSLLTTSVTADSSSRTSPWAADRVTRSVEPTKSRP 449

Query: 493 LTQYMSQLTDPSPVKVYVPEPLPPLKRKFMFQSKCTCPLPLPQLGGKK 636
            +  +     P  V      PLPP   + + +++   P PLPQL  +K
Sbjct: 450 TSLIVPNTETPRTVSPASKPPLPPQSVERVERTEDASPAPLPQLPIRK 497


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 310 SCSLPRRKAHPLPGRKENPLPRESARSPTLPR 405
           S S PRR+    P ++    PR + RSP+ PR
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPR 119


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
 Frame = +1

Query: 322 PRRKAHPLPGRKENPLPRESARSPTL-----PRCQTCPLPS*RDCQGTSSRTATLTQSKR 486
           P  KA P P  K  P P  +    T+     P   T P P+    + T+++  T   +K 
Sbjct: 194 PTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTKPTK- 252

Query: 487 RCLTQYMSQLTDPSPVKVYVPEPLPPLKRKFMFQSKCTCP 606
                  +    P+PV   VP P PP     + + K T P
Sbjct: 253 -------AAPPAPTPVPNPVPSPPPPPANTTVTEEKTTVP 285


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 517 TDPSPVKVYVPEPLPPLKRKFMFQSKCTC--PLPLPQL 624
           T  +P  + V  P P   R   FQ+KCT    +P+PQ+
Sbjct: 298 TSKTPTAIRVRRPSPTNLRSVSFQNKCTVLKNVPMPQV 335


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 418 PLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYVPEPLPPL 567
           PLP   D + TS+ T     S   CL   +   +   P  VY PE   P+
Sbjct: 315 PLPLPEDVRSTSASTYYRNSSNLDCLKSSLPIKSTMEPASVYQPEEESPV 364


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 418 PLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYVPEPLPPL 567
           PLP   D + TS+ T     S   CL   +   +   P  VY PE   P+
Sbjct: 321 PLPLPEDVRSTSASTYYRNSSNLDCLKSSLPIKSTMEPASVYQPEEESPV 370


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/95 (24%), Positives = 31/95 (32%)
 Frame = +1

Query: 286 NRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTA 465
           N N    S  S PR  A         P PR   + P  P  Q  P P          +  
Sbjct: 152 NENVSEMSQRSAPRTAASTRTAISAPPPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAP 211

Query: 466 TLTQSKRRCLTQYMSQLTDPSPVKVYVPEPLPPLK 570
               +    +    + + DP+P  V   +P PP K
Sbjct: 212 EPVPAPVEQIAPPPAPVQDPAPAPVEPSDPAPPSK 246


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 373 RESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTD 522
           + S+ SP+    QT P+       G+SS  A+LTQ +  CL   M+   D
Sbjct: 711 KSSSSSPSTSTHQT-PIQRVASNLGSSSFVASLTQEQANCLQNAMNTAKD 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,964
Number of Sequences: 27780
Number of extensions: 250463
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)