Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30715
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66850.1 68418.m08428 protein kinase family protein contains ... 32 0.42
At3g24540.1 68416.m03082 protein kinase family protein contains ... 29 3.0
At5g15510.1 68418.m01816 expressed protein 29 3.9
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 5.2
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 5.2
At3g25560.2 68416.m03179 protein kinase family protein contains ... 28 5.2
At3g25560.1 68416.m03178 protein kinase family protein contains ... 28 5.2
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 28 5.2
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 28 5.2
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 5.2
At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase, pu... 27 9.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 9.0
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 280 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 441
PQ R+ R + P R + PL + PR+S SP PR T RDC
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 472 TQSKRRCLTQYMSQLTDPSPVKVYVPEPL 558
TQ K R MS + P P +V+VPEPL
Sbjct: 25 TQLKSRWQQITMSSASSPPPPQVFVPEPL 53
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 331 KAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMS 510
KA P+P +PR S++ PT PR +P + + SS + + T S C++ +
Sbjct: 438 KAQPMPYFDRPFIPRRSSKHPTAPRDPKFHIPQHKKIRCCSSSSWSETGS---CMSDFQY 494
Query: 511 Q 513
Q
Sbjct: 495 Q 495
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = +1
Query: 370 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYMSQLTDPSPVKVYVP 549
P +S +P+ P P+ ++T T + S + + +++ SP VP
Sbjct: 28 PTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVP 87
Query: 550 EPLPPLKRKFMFQSKCTCPLPLP 618
E PP+ + + P+P P
Sbjct: 88 ESSPPVPAPMVSSPVSSPPVPAP 110
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 319 LPRRKAHPLPGRKENPLPRESARSPTLP 402
+P K P+P K P+P S SP++P
Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At3g25560.2 68416.m03179 protein kinase family protein contains
Prosite:PS00108: Serine/Threonine protein kinases
active-site signature and PS00107: Protein kinases
ATP-binding region signature
Length = 636
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 364 PLPRESARS-PTLPRCQTCPLPS*RDCQGTSSRTATLT 474
P+PR A++ + Q CP + +DC GT + ++T
Sbjct: 193 PVPRSLAKTFNVMGNSQICPTGTEKDCNGTQPKPMSIT 230
>At3g25560.1 68416.m03178 protein kinase family protein contains
Prosite:PS00108: Serine/Threonine protein kinases
active-site signature and PS00107: Protein kinases
ATP-binding region signature
Length = 635
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 364 PLPRESARS-PTLPRCQTCPLPS*RDCQGTSSRTATLT 474
P+PR A++ + Q CP + +DC GT + ++T
Sbjct: 192 PVPRSLAKTFNVMGNSQICPTGTEKDCNGTQPKPMSIT 229
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 328 RKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYM 507
R A +P R +P P S + T T TSS ++ + +S +R + +
Sbjct: 42 RAAKNVPSRYLSPSPSHSTTTTTTTATST----------STSSSSSVILRSSKRYPSPLL 91
Query: 508 SQLTDPSPVKVYVPEPLP 561
S+ T+ + VY P LP
Sbjct: 92 SRTTNSASNLVYTPSSLP 109
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 328 RKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQYM 507
R A +P R +P P S + T T TSS ++ + +S +R + +
Sbjct: 42 RAAKNVPSRYLSPSPSHSTTTTTTTATST----------STSSSSSVILRSSKRYPSPLL 91
Query: 508 SQLTDPSPVKVYVPEPLP 561
S+ T+ + VY P LP
Sbjct: 92 SRTTNSASNLVYTPSSLP 109
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 400 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 314
VG+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
endoxyloglucan transferase EXGT-A1 GI:5533309 from
[Arabidopsis thaliana]
Length = 292
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 683 QGNIVTGKPFNGVKVLFFPPNWGKGSGHVHFDWNM---NFLFNGGKGSGTYTLTGDGSVN 513
QG KP V L+ NW G +W++ F G SG +T +
Sbjct: 181 QGMNYPSKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCFTNAEKNACG 240
Query: 512 WDMYW 498
YW
Sbjct: 241 SSAYW 245
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.5 bits (58), Expect = 9.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 325 RRKAHPLPGRKENPLPRESARSPTLP-RCQTCPLPS*RDCQGTSSRTATLTQSKRRCLTQ 501
RR H GR+++P P RSP+ P R + P P R R+ + + R T
Sbjct: 293 RRPTHE--GRRQSPAPSRRRRSPSPPARRRRSPSPPAR-----RRRSPSPPARRHRSPTP 345
Query: 502 YMSQLTDPSPVKVYVPEPLPPLKRK 576
Q PSP P PP +R+
Sbjct: 346 PARQRRSPSPPARRHRSP-PPARRR 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,743
Number of Sequences: 28952
Number of extensions: 244595
Number of successful extensions: 807
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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