Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6F0X8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.73 
UniRef50_Q99700 Cluster: Ataxin-2; n=50; Euteleostomi|Rep: Ataxi...    33   9.0  

>UniRef50_Q6F0X8 Cluster: Putative uncharacterized protein; n=1;
           Mesoplasma florum|Rep: Putative uncharacterized protein
           - Mesoplasma florum (Acholeplasma florum)
          Length = 159

 Score = 36.3 bits (80), Expect = 0.73
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
 Frame = +1

Query: 7   YDNYRKNKARVDARDT*TVNNKIKTPLRSNATNI-LQCYIEPINHITLTLAVKKKN*CNT 183
           Y+ Y+KN   V   +   V +K+     +N  NI LQ  +  +  +   L+ +       
Sbjct: 51  YEKYKKNNDNVQKSEI--VKHKLPDSKNNNIDNIFLQNALSELEKLNSKLSFQNSKLRLR 108

Query: 184 SKEKRKKKSAAICHSLSTMTK---NRNSYCLIGLVPIITCQRD*NYCHRE 324
            + K  KKS  I  +LST+ K   N      I  V IITC+   N+   E
Sbjct: 109 EELKNNKKSGVIKENLSTLNKEIINLKKEIEITKVEIITCKNKINFLKGE 158


>UniRef50_Q99700 Cluster: Ataxin-2; n=50; Euteleostomi|Rep: Ataxin-2 -
            Homo sapiens (Human)
          Length = 1312

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 685  RIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHP 572
            ++RK T  PN+   NPR F +P P S  P  P     P
Sbjct: 907  QVRKSTLNPNAKEFNPRSFSQPKP-STTPTSPRPQAQP 943


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,123,703
Number of Sequences: 1657284
Number of extensions: 11126772
Number of successful extensions: 28546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)