Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.34 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.4  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 653  PPS*P*GVWTPHTVFWQPRGTANKSAPGPLLSRPLP----ENIRHCFKKL 516
            PP  P G+   +TV+++P  T +K+   P   + +P    +N+ H  K L
Sbjct: 1223 PPVEPNGIVEYYTVYYKPVSTDDKTEVKPTSQKIVPNLRNQNLSHQAKNL 1272


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 566 LLSRPLPENIRHCFKKLREHSIFALNKK*KKCKYYFGL 453
           LL RPLP   R  F+ L+  +     +  ++   +FGL
Sbjct: 138 LLDRPLPAPERPSFEGLKRQNPVKFLRAIEEYGRFFGL 175


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 CLIGLVPIITCQRD*NYCHRE 324
           CL+G    + CQR+  +  RE
Sbjct: 68  CLVGTPETLRCQREGFFHERE 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,631
Number of Sequences: 336
Number of extensions: 2559
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)