Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.6  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 661  PNSLPLNPRGFGRPTPFSGNPEEPL 587
            P++LP+ P G+ +P P      +PL
Sbjct: 1052 PSALPIQPTGYMQPIPVQATGYQPL 1076


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 640 PRGFGRPTPFSGNPEEPLTNRHPVHF*VDRFQKIYAIVLKNLEN 509
           PR  G P P   +P+EP  +  P  + V+   K Y ++   LE+
Sbjct: 23  PRTHG-PKPSENDPKEPTCSPSPAFYSVNGEMKDYKLMALELED 65


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 13  NYRKNKARVDARDT*TVNNKIKTPLRSN-ATNILQCYIEPINHITLTLAVKKKN*CNTSK 189
           N+R++    D   +  + N+ K  ++   A  I    +      +  ++ KKKN   TSK
Sbjct: 11  NFRRSDPAYDLDSSTAIENETKLSVKEKVAKEIANIALRSGGSESNGISKKKKNKKQTSK 70

Query: 190 EKRKKKSAAI 219
           + + K +AA+
Sbjct: 71  KAKDKLAAAL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,087
Number of Sequences: 5004
Number of extensions: 47097
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)