Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594           29   3.6  
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    29   3.6  
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199...    29   3.6  
06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634           28   6.3  

>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
          Length = 622

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 655 SLPLNPRGFGRPTPFSG 605
           SLP +P GFG PTP  G
Sbjct: 87  SLPASPSGFGAPTPVGG 103


>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 686 PYPKNYQKAQFPPS*P*GVWT-PHTVFWQPRGTANKSAPGPLLSRPLPENIR 534
           P P     AQ PP  P   W  PHT   +PR   + + P P L  PLP   R
Sbjct: 390 PPPGPPPLAQAPPRHPPRPWCRPHTP--RPRSPHSPTHPRPRLHHPLPRPTR 439


>01_05_0422 -
           22018579-22018698,22019548-22019644,22019744-22019908,
           22022274-22022339,22022441-22022540,22022662-22023304
          Length = 396

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 694 GRSRIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHPVHF 563
           GRS  R++   P +  L+  G G PT  +G P++   + H   F
Sbjct: 43  GRSLHRRLKLHPRNPSLSGAGAGAPTGGNGAPQKQQNHHHAAPF 86


>06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634
          Length = 180

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 70  KIKTPLRSNATNILQCYIEPINHITLTLAVKKKN*CNTSKE---KRKKKSAAICHSLSTM 240
           KI +P+ S+  NIL        H      +K+    N+ KE   K+K K A + HS S +
Sbjct: 85  KISSPVASSEANILSVAYSEAFH-----TLKRYKLLNSGKENVYKKKVKEADVVHSFSEI 139

Query: 241 TKNRN 255
            + +N
Sbjct: 140 AEYKN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,157
Number of Sequences: 37544
Number of extensions: 286472
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)