Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.                   33   1.3  
U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.               33   1.3  
BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein.        33   1.3  
BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein.        33   1.3  

>Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.
          Length = 914

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 685 RIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHP 572
           ++RK T  PN+   NPR F +P P S  P  P     P
Sbjct: 827 QVRKSTLNPNAKEFNPRSFSQPKP-STTPTSPRPQAQP 863


>U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.
          Length = 1312

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 685  RIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHP 572
            ++RK T  PN+   NPR F +P P S  P  P     P
Sbjct: 907  QVRKSTLNPNAKEFNPRSFSQPKP-STTPTSPRPQAQP 943


>BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein.
          Length = 1006

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 685 RIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHP 572
           ++RK T  PN+   NPR F +P P S  P  P     P
Sbjct: 619 QVRKSTLNPNAKEFNPRSFSQPKP-STTPTSPRPQAQP 655


>BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein.
          Length = 1127

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 685 RIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHP 572
           ++RK T  PN+   NPR F +P P S  P  P     P
Sbjct: 697 QVRKSTLNPNAKEFNPRSFSQPKP-STTPTSPRPQAQP 733


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,314,280
Number of Sequences: 237096
Number of extensions: 1546834
Number of successful extensions: 3547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)