Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 29/89 (32%), Positives = 39/89 (43%)
 Frame = +1

Query: 118 YIEPINHITLTLAVKKKN*CNTSKEKRKKKSAAICHSLSTMTKNRNSYCLIGLVPIITCQ 297
           YI   N    T A  K+N         +KKS +I    ST    R+ + L+GL      Q
Sbjct: 326 YIRGANVTLRTAASYKENSGKDGNNYARKKSVSIRSRQSTKCDPRSLHTLMGL-----AQ 380

Query: 298 RD*NYCHREISTLRISNPTEQLERTKTDL 384
           R   + +  +   RI NPT  L  TKTD+
Sbjct: 381 RF-GFDYLILWAARIDNPT--LTLTKTDI 406


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 78  FNFVIYCLCVSGVDSGFVFPIIIIVI 1
           F F+++  C+SG   GF++ II++++
Sbjct: 378 FKFILFLACISG--CGFIYTIIVMIM 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,626
Number of Sequences: 27780
Number of extensions: 266728
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)