Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.92 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 214 AICHSLSTMTKNRNSYCLIGLVPIITCQRD*NYCHREISTLRISNPTEQLERTKTDLNIH 393
           A CHS S++TK+R   CL   +     +R  +     + T +I +  +   R K  L  +
Sbjct: 134 AACHSGSSLTKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDN 193

Query: 394 ALKSK 408
            +  K
Sbjct: 194 LIPDK 198


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 653  PPS*P*GVWTPHTVFWQPRGTANKSAPGPLLSRPLPENIRH 531
            PPS P GV T +TV+     T   +A  P   +  P  + H
Sbjct: 1202 PPSQPNGVITQYTVY-----TKADNAEEPTSQKVPPNQLTH 1237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,278
Number of Sequences: 438
Number of extensions: 3780
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)