Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30714
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29450.1 68417.m04204 leucine-rich repeat protein kinase, put...    31   0.98 
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    29   4.0  
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova...    28   5.2  

>At4g29450.1 68417.m04204 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 863

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 145 LTLAVKKKN*CNTSKEKRKKKSAAI 219
           LTL+  ++N CN+ +EK+KKKS  +
Sbjct: 490 LTLSADEQNLCNSCQEKKKKKSMVV 514


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 508 CSL-SFLKQWRIFSGSGRLKSGPGADL 585
           CS+ SF+K WR  S S RL S P  DL
Sbjct: 40  CSIRSFIKSWRFNSYSIRLTSPPSLDL 66


>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 270

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 691 RSRIRKITKRPNSLPLNPRGFGRPTPFSGNPEEPLTNRHPVH 566
           +S+ + +  +PNS     +    PTP S  P  P   R P H
Sbjct: 26  KSKKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSH 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,901
Number of Sequences: 28952
Number of extensions: 240659
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)