Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30713
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    41   0.031
UniRef50_UPI00006CB8DF Cluster: hypothetical protein TTHERM_0072...    33   6.2  
UniRef50_Q8EWQ1 Cluster: Predicted coiled-coil structure contain...    33   6.2  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 40.7 bits (91), Expect = 0.031
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 185  ISGRQRLGSAPGITKVHGRR 244
            +SGRQRLGSAPGI +VHGRR
Sbjct: 967  LSGRQRLGSAPGIAEVHGRR 986


>UniRef50_UPI00006CB8DF Cluster: hypothetical protein
           TTHERM_00727780; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00727780 - Tetrahymena
           thermophila SB210
          Length = 242

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 341 FNVCIYYIFLFNLVKESHFRFQFTKTYIFQSSQKKP 448
           F++C+ +I +  ++K+  FR+ +T TY  Q  Q  P
Sbjct: 12  FSLCLIWIIIDAILKDDLFRWNYTFTYSLQQGQSNP 47


>UniRef50_Q8EWQ1 Cluster: Predicted coiled-coil structure containing
           protein; n=1; Mycoplasma penetrans|Rep: Predicted
           coiled-coil structure containing protein - Mycoplasma
           penetrans
          Length = 1112

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = -2

Query: 268 RPI*CEWLPSPMNFSNARGRTKPLPTANLIRFHYNTVNQNIW*KNVSKEKNQSYNLNRIR 89
           RP+  E LP+P+N + A    +    ++ I    N+VNQN+    VSKEKNQ  ++N ++
Sbjct: 355 RPVEIEQLPTPVN-TTAPIIDEVKNLSSKIEALENSVNQNV----VSKEKNQPVSVNEVQ 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,551,158
Number of Sequences: 1657284
Number of extensions: 11042273
Number of successful extensions: 21912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21908
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)