Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30713
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.2  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   7.5  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.9  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.9  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 379  SERKSFSFSIHKNIHF--SIISKKTSCSSNISLILYKKFQQLQFSHFMSIKW 528
            SER+  S S H   HF  S++ KK   +  I  ILY ++ QL   H +   W
Sbjct: 1068 SERRDSSTSSHFEEHFVFSLMGKKVPRNKTIFRILY-EYIQLSDDHTLDDFW 1118


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 230 VHGRR*PLTS-DGPYARLPTRAIKNKVKFLV 319
           V G+  P+T   GP++R  T A KN++K LV
Sbjct: 576 VSGQTFPVTDVPGPHSRKVTTASKNRLKMLV 606


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 403 SIHKNIHFSIISKKTSCSSNISLILYKKFQQLQFSHFMSIK 525
           +I  NIH  II +  + S+N    L+KK +Q     F+ IK
Sbjct: 112 TIPANIHIPIIEESDNASNNKLCTLFKKSKQPNLD-FLQIK 151


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 625 MENERIIYVITRPLFLLNREIRMFFVESPSTP 530
           +  +R+    T+PL L N   RMFFV+SP  P
Sbjct: 652 INRDRVHSFPTQPL-LNNNLPRMFFVKSPKKP 682


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 311 FLVTPDM*CPFNVCIYYI-----FLFNLVKESHFRFQFTKTYIFQ 430
           FL   +   P +VCIY++     FL+  +  +H+RF  TK  + Q
Sbjct: 366 FLNVANKYLPNSVCIYHVPRAGLFLWVELNLNHYRFSDTKKSVSQ 410


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 403 SIHKNIHFSIISKKTSCSSNISLI 474
           SIH +I F I +  TSC +NISL+
Sbjct: 37  SIH-SIPFHISTHLTSCQANISLL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,897
Number of Sequences: 5004
Number of extensions: 49995
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)