Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30713
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13140.1 68418.m01505 expressed protein                             29   2.1  
At1g74130.2 68414.m08585 rhomboid family protein contains Pfam p...    29   2.1  
At1g74130.1 68414.m08586 rhomboid family protein contains Pfam p...    29   2.1  

>At5g13140.1 68418.m01505 expressed protein
          Length = 267

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 217 RGRTKPLPTANLIRFHYNTVNQNIW*K--NVSKEKNQSYNLNRIRHHLCCKFKS*AVSTF 44
           RGR +P P  +L      TV   ++    +++    QSY L  +  H+ C+FK+ +  T 
Sbjct: 22  RGRGRPSPEGSLDPSSRITVVGVVYCDTCSINTFSRQSYFLQGVEVHVTCRFKASSPKTA 81

Query: 43  NDIN 32
            ++N
Sbjct: 82  EEVN 85


>At1g74130.2 68414.m08585 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 296

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 510 FYEYKVAGVDGL-STKNILISRFSKKSGRVIT*IIRSFSIIMVT 638
           F  ++V G D +   KN ++SR+S  +GR+ T I   FS +  T
Sbjct: 129 FTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGAT 172


>At1g74130.1 68414.m08586 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 322

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 510 FYEYKVAGVDGL-STKNILISRFSKKSGRVIT*IIRSFSIIMVT 638
           F  ++V G D +   KN ++SR+S  +GR+ T I   FS +  T
Sbjct: 129 FTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGAT 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,056
Number of Sequences: 28952
Number of extensions: 240820
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)