Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30712
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    30   0.28 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   2.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   3.5  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    26   4.6  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   6.1  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   6.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.1  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   8.1  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   8.1  

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +3

Query: 156 DEEDSIPDVGVEEDSDELALDQEETRNLRPRAYRRLHTTLCPAASVQHLPWLNWLGT-NN 332
           D++ S+P  G+ ED+D L+L +  + + R  ++  L          +     N   T  +
Sbjct: 434 DDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKIPDSDICFTRRRSDSNRTWTVID 493

Query: 333 GHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESL 440
            H+S+S  N        SK  + + + P +LS + L
Sbjct: 494 PHHSQSFDNDILAEIPTSKLDNSSQKSPGKLSSKGL 529


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 PRAYRRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLPGSNS 386
           P   R++HT      + + +  L      N   + S++ ++YLPGS++
Sbjct: 173 PTTLRKIHTNTSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSST 220


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 537 APTVKVQLRSANRPATTLTREL*TAKVFHYCQDSVQATSWDSCPERVS 680
           AP+      + N+P   L  E+   +  HY Q+    +  D  PE VS
Sbjct: 126 APSKGPSFSNLNKPNDLLKAEIEDNEASHYSQNQSSDSDSDEAPEEVS 173


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 273 LCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLP 374
           L   A +++ PW+  +    GH S+  KNT+  P
Sbjct: 360 LLRGAQLRNTPWVYGIVVFTGHESKLMKNTTETP 393


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 162 EDSIPDVGVEEDSDELAL----DQEETRNLRPRAYRRLHTTL 275
           E+ + D  V+  S +LAL     QEE   LRP +Y + H  L
Sbjct: 43  ENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIIL 84


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 207 VHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLS 91
           +H+CLPPL R    +   K +P    +    NS   PLS
Sbjct: 58  IHKCLPPLQRN-NTIRKRKRNPFLADRPYCINSEDMPLS 95


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 138 GVAMASDEEDSIPDVGVEEDSDELALDQEE 227
           G A+A +  D   D+ VEED D++     E
Sbjct: 336 GEALALENYDGFSDLDVEEDEDDVESSSNE 365


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 219  DPEPVHRCLPPLPRQVYCLLHPKPSPLRPAK 127
            D +  +  +P  PRQ+  +L  KP P +  K
Sbjct: 1348 DSDKFYLTIPDFPRQINGILEGKPLPTKSTK 1378


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/88 (20%), Positives = 38/88 (43%)
 Frame = +3

Query: 135 VGVAMASDEEDSIPDVGVEEDSDELALDQEETRNLRPRAYRRLHTTLCPAASVQHLPWLN 314
           V  A+  D  D   +  V E+      D+  + +    +++  +  L    ++ H+P+  
Sbjct: 66  VASAVDQDPNDEESENFVYENLIPTNDDELHSPSASIHSFQTYNLPLEMLPTINHVPYYG 125

Query: 315 WLGTNNGHNSRSSKNTSYLPGSNSKFTS 398
             GTN  +    S +   +P  ++KF+S
Sbjct: 126 SAGTNALNGGPLSNSRKLIPKRSAKFSS 153


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 333 GHNSRSSKNTSYLPGSNSKFTSKNLERP--SELSRESLK 443
           G+ +   K    L  SN   TSK+++RP  SEL +E L+
Sbjct: 53  GNFASLEKQMKKLQLSNDASTSKSIDRPPISELEKEKLE 91


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 527 SLSCSNSQSSTAFGKQTGYYADEGTLNCESVPLLPGQRSS 646
           S+  S + SST + +Q  Y  +EG    ++ P++P + SS
Sbjct: 95  SIDASANHSSTTYREQRSYLMEEG---LDTQPIVPREVSS 131


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 141 VAMASDEEDSIPDVGVEEDSDELAL--DQEETRNLRPRAYRR 260
           VA   DEE+  P  G EED DEL +   ++ET  +   A +R
Sbjct: 198 VASDKDEEEK-PWSGDEEDDDELVVKDSEDETEGVSTIASQR 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,458
Number of Sequences: 5004
Number of extensions: 50860
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)