Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30712
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0750 - 31662986-31663273 34 0.13
03_06_0776 - 36176390-36177589 30 1.6
03_02_0545 + 9373344-9374963 30 2.1
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 29 4.8
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405... 28 6.4
01_01_0896 + 7060431-7061390,7063562-7064191 28 6.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.4
07_01_0516 - 3850252-3852870 28 8.4
05_03_0458 + 14280953-14281866,14281964-14282912 28 8.4
04_03_0799 - 19805190-19805749,19806316-19806403 28 8.4
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 28 8.4
>01_06_0750 - 31662986-31663273
Length = 95
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 321 PASSAREGVGRKPLGRALYAVGGKHADEDS-LFPPDPEPVH 202
PA++A E GR+ G A+ VGG A E L P P+P H
Sbjct: 54 PAAAAGEAAGRRSGGGAVVVVGGAAAHESKRLSPGGPDPQH 94
>03_06_0776 - 36176390-36177589
Length = 399
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 318 ASSAREGVGRKPLGRALYAVGGKHADEDSLFPPDPEPVHRCLPPL-PRQVYCLLHPKPSP 142
A++AREG K L ++ E +FP + + LPPL V LL P P P
Sbjct: 335 AAAAREGREEKEEKNKLASIEEDERRERDVFPSPSPFLRQTLPPLMATAVVLLLLPPPPP 394
Query: 141 L 139
L
Sbjct: 395 L 395
>03_02_0545 + 9373344-9374963
Length = 539
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -1
Query: 249 HADEDSLFPPDPEPVHRCL---PPLPRQVYCLLHPKPSPLRPA 130
H D D PP P P RCL P + L PSP PA
Sbjct: 34 HDDFDLFLPPPPGPFRRCLHAAAAAPPDINLPLDADPSPPPPA 76
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 324 TNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSKD 452
T+N N+ + + +P KF+ +E+P E S E K+
Sbjct: 82 TDNNDNAVPEEPNNTVPSEEEKFSENTVEKPVESSEEKAPPKE 124
>04_04_0415 +
25038826-25038835,25039333-25039964,25040484-25040561,
25040588-25040833,25041598-25041684,25041860-25042024
Length = 405
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 527 SLSCSNSQSSTAFGKQTGYYADEGTLNCESVPLLPGQRSSNFL 655
+++C+N+ S F + G G++N +PLL G++++ L
Sbjct: 330 NVACNNTASHKEFSEFPGPDIKFGSINIRDIPLLQGRQAAVIL 372
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 300 LPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRE 434
LPWL W+ NG + + L G K + R E+ R+
Sbjct: 236 LPWLGWVDALNGMEVKVQRTFEALDGILEKVIDDHRRRRREVGRQ 280
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 228 FPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRP 133
F P P P PPLP+ Y P P P P
Sbjct: 561 FSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>07_01_0516 - 3850252-3852870
Length = 872
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 231 LFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLR 136
L PP P P R LPP P P P P R
Sbjct: 14 LLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPR 45
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 225 PPDPEPVHRCLPPL-PRQVYCLLHPKPSPLRPAKVLRENSTSFP 97
PP P+ PPL P + C HP P P P+ +++S P
Sbjct: 65 PPPLPPLQPTPPPLPPTTLSCSSHPTPPP-PPSPTTSPSASSLP 107
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -1
Query: 222 PDPEPVHRCLPPLPRQVY--CLLHPKPSP 142
P P P C PP Q Y C PKP P
Sbjct: 106 PAPPPPPACCPPSTHQCYHCCPAPPKPKP 134
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 234 SLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLREN 112
++ PP P P LPP P+ + P P P P+ + N
Sbjct: 539 NMLPPPPPPPRNMLPPPPKSM-----PPPPPKFPSNEMSRN 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,823
Number of Sequences: 37544
Number of extensions: 392151
Number of successful extensions: 1651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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