Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30712
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           31   1.2  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_48604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 318 ASSAREGVGRKPLGRALYAVGGKHADEDSLFPPDPEPVHRCLPP 187
           A  AR+GVGR+   RA+     +   +DS   P  +P H+ LPP
Sbjct: 289 AVKARQGVGRQSNARAVVIPTAQINQQDSP-SPGQDPSHQSLPP 331


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -1

Query: 222 PDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 130
           P   PV RCLP LP     LL   PS  +PA
Sbjct: 335 PQLPPVFRCLPQLPPVFPGLLTAPPSISKPA 365


>SB_48604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 327 NNGHNSRSSKNTSYLPGSNSKFTSKN 404
           NN +N+ SS N +  P  +S FT+KN
Sbjct: 31  NNNNNNSSSNNNNNNPKEHSIFTNKN 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,549,604
Number of Sequences: 59808
Number of extensions: 408237
Number of successful extensions: 1707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)