Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30712
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    28   5.7  
U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    28   5.7  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81017-13|CAB02674.2|  526|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z68005-5|CAA91993.2|  526|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -1

Query: 261 VGGKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLR 118
           V GK A  +SL  P P P     PP         H +P PL P  + R
Sbjct: 574 VNGKQASIESLSDPPPPPYAPPSPPRASSA-AAAHQQPPPLPPKPLAR 620


>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 590 DEGTLNCESVPLLPGQRSSNFLGFLPGTGFNISHQGW 700
           D   L+C++   + GQ+ + FLGFL  T     H  W
Sbjct: 192 DVMVLSCDNCYAMIGQKQAGFLGFLQTTLSRSEHHIW 228


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 590 DEGTLNCESVPLLPGQRSSNFLGFLPGTGFNISHQGW 700
           D   L+C++   + GQ+ + FLGFL  T     H  W
Sbjct: 249 DVMVLSCDNCYAMIGQKQAGFLGFLQTTLSRSEHHIW 285


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 242 TKIPCFLLIQSQFIAVFLHSHVRYTVFFIR---SHR 144
           TK  CFL + SQF+AVFL+S     + +I+   SHR
Sbjct: 235 TKAICFLTV-SQFVAVFLNSFGMIVLVYIQESISHR 269


>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 290 GSRWAERCMQSAVSTRTKIPCFLLIQSQFIAVFLHSHVRYTVFFIRSHRHSDQQK 126
           GS W +R  ++   T  +        S+F+   +   V +++ FI SHR   QQ+
Sbjct: 95  GSLWVDRSNKTPRQTFFRCSPTRSQVSRFLLNIIFDFVPFSICFISSHRSQSQQR 149


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 174 PDVGVEEDSDELALDQEETRNLRPRAYRRLHTTLCPAASVQHLPW 308
           P+V  E+D     +D E  R+     Y   +  L P  SV H  W
Sbjct: 513 PEVAAEKDDGIFWIDYESVRHFFDVIYVNWNADLFPFKSVYHATW 557


>U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical
           protein C50F7.9 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 ASVQHLPWLNWLGTNNGHNSRS 350
           +S Q++ WLNWL  NN H   S
Sbjct: 87  SSKQYILWLNWLVDNNEHMCNS 108


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 225 PPDPEPVHRC-LPPLPRQVYCLLHPKPSP 142
           PP PEP+  C  PP P Q Y  L P P P
Sbjct: 27  PPCPEPMPVCATPPCPPQ-YAPLPPPPMP 54


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 MASDEEDSIPDVGVEEDSDELALDQEE 227
           M  +EE+   + G +ED DE+ +D EE
Sbjct: 35  MEDEEEEMEENEGDDEDEDEMVMDDEE 61


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 199 AMNWLWIRRKQGIFVRVLTADCIQRSA 279
           A +WLW  RK  + V V+ + C Q+ A
Sbjct: 746 ATHWLWKVRKTKMIVNVIASSCTQQIA 772


>Z81017-13|CAB02674.2|  526|Caenorhabditis elegans Hypothetical
           protein F59F3.4 protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 153 SDEEDSIPDVGVEEDSDELALDQEETRNLRPRAYRRLH 266
           SD+    PD+ V ++ DE+ +D+E    L    +R  H
Sbjct: 23  SDDASGYPDIEVIDNEDEMYIDEETYEYLTNHYFRAGH 60


>Z68005-5|CAA91993.2|  526|Caenorhabditis elegans Hypothetical
           protein F59F3.4 protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 153 SDEEDSIPDVGVEEDSDELALDQEETRNLRPRAYRRLH 266
           SD+    PD+ V ++ DE+ +D+E    L    +R  H
Sbjct: 23  SDDASGYPDIEVIDNEDEMYIDEETYEYLTNHYFRAGH 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,006,805
Number of Sequences: 27780
Number of extensions: 310243
Number of successful extensions: 1252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)