Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30712
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 34 0.11
At4g18390.1 68417.m02729 TCP family transcription factor, putati... 31 1.00
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.7
At2g05290.1 68415.m00557 expressed protein similar to zinc finge... 29 2.3
At2g31920.1 68415.m03899 expressed protein 29 3.0
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 29 3.0
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 29 4.0
At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical... 29 4.0
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 28 5.3
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof... 28 5.3
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 5.3
At5g64400.1 68418.m08090 expressed protein contains Pfam domain,... 28 7.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 7.0
At4g03400.1 68417.m00462 auxin-responsive GH3 family protein sim... 28 7.0
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote... 27 9.3
At5g57390.1 68418.m07170 ovule development protein, putative sim... 27 9.3
At5g37010.1 68418.m04438 expressed protein 27 9.3
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 9.3
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 246 RAYRRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYL 371
+ R HT++C +SVQ +PW W G++ +NS N +++
Sbjct: 141 KTLRAGHTSIC--SSVQFIPWRPWEGSDTNNNSGQCLNPAFV 180
>At4g18390.1 68417.m02729 TCP family transcription factor, putative
similar to TFPD (GI:6681577) [Arabidopsis thaliana];
teosinte branched1 protein - Zea mays, PIR2:T04347
Length = 365
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 339 NSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSKDH 455
NS +SKN+S L S S+ K ER E + + K +DH
Sbjct: 136 NSDTSKNSSGLSLSRSELRDKARERARERTAKETKERDH 174
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 222 PDPEPVHRCLPPLPRQVYCLLHPKPSPL 139
P P PVH PP P C P P+P+
Sbjct: 682 PPPSPVHYSSPPPPPSAPCEESPPPAPV 709
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -1
Query: 231 LFPPDPEPVHRCLPP----LPRQVYCLLHPKPSPLRP 133
++ P P PV+ PP P VYC P P P P
Sbjct: 509 VYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSP 545
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSPL 139
PP P PVH PP P Y P PSP+
Sbjct: 661 PPPPPPVHYSSPPPPEVHY--HSPPPSPV 687
>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 383
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 354 KNTSYLPGSNSKFTSKNLERPSELSRESLKSK 449
+NT G N K S++LE S+L+R SL+ +
Sbjct: 329 RNTKDRKGKNRKIMSESLENKSDLNRNSLEKR 360
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 282 LGRALYAVGGKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHP 154
LG+ +Y GG H ++ P PV R L P+P++ C+ +P
Sbjct: 85 LGQFIYICGGLHVEKGC-----PVPVIRGLKPVPKRRMCVGNP 122
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 270 TLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLPG-SNSKFTSKNLERPSELSRESLKS 446
TL P+++ +++ NN H+S ++SYL ++ T+K L PS+ S+
Sbjct: 3 TLTPSSASTPKTSFDFMKNNNSHSSLYVSSSSYLSSKEDALVTTKKLMEPSKTLNMSINP 62
Query: 447 K 449
K
Sbjct: 63 K 63
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -1
Query: 234 SLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSF--PLSRTEKLSVKNY 61
SL PP P P PP P Y + P P P RP F PL + +KN+
Sbjct: 77 SLPPPSPSPEPEHYPPPPYHHY--ITPSPPPPRPLPPPPPPPLHFSSPLIKKVYPVIKNF 134
Query: 60 NT 55
T
Sbjct: 135 QT 136
>At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical to
Cytochrome P450 [Catharanthus roseus] (gi|404690)
Length = 476
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 175 LTWEWRKTAMNWLWIRRKQ 231
L W WR A+NW+W+R K+
Sbjct: 20 LNWVWR--AVNWVWLRPKR 36
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 130
PP P+P PP P+ PKP P +PA
Sbjct: 28 PPKPKPAPAPTPPKPKPTPAPTPPKPKP-KPA 58
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 130
PP P+P PP P+ PKP P +PA
Sbjct: 61 PPKPKPAPAPTPPKPKPAPAPTPPKPKP-KPA 91
>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 517
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 216 PEPVHRCLPPLPRQVYCLLHPKPSPLRP 133
P P+ PPLP L P P PL P
Sbjct: 299 PPPIETKTPPLPPPPPTLTQPHPKPLTP 326
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKV 124
PP+P+P PP P+ V C PKP P V
Sbjct: 82 PPEPKPAP---PPAPKPVPCPSPPKPPAPTPKPV 112
>At5g64400.1 68418.m08090 expressed protein contains Pfam domain,
PF04933: Protein of unknown function (DUF657)
Length = 144
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 222 PDPEPVHRCLPPLPRQ 175
P P+PVHR PP P Q
Sbjct: 22 PAPQPVHRAPPPAPAQ 37
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSP 142
PP P P H PP P VY P P P
Sbjct: 769 PPPPSPAHYSPPPSP-PVYYYNSPPPPP 795
>At4g03400.1 68417.m00462 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 591
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 651 KLLERCPGSSGTLSQFKVP 595
K+ ERC G G L+QFK P
Sbjct: 547 KVAERCVGKCGGLNQFKTP 565
>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 153 KPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQKAREMTETRQRL 1
+P+P A + ++ + RT + V N +T+ R+K + ET QR+
Sbjct: 318 EPNPKGEASLSQQQQSQNQTPRTRAVPVLNSDTESQKREKEVQFQETEQRI 368
>At5g57390.1 68418.m07170 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 555
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 267 TTLCPAASVQ-HLPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELS 428
++L P++S H WL++ +NN +N SS N P S + + PS LS
Sbjct: 16 SSLSPSSSSSSHQNWLSFSLSNNNNNFNSSSN----PNLTSSTSDHHHPHPSHLS 66
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 225 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKN 64
P P P P ++ P P + NS +FPLS+ +KL N
Sbjct: 278 PRSQSPARAASQPSPSKLSRKTEHSPYRRNPLSEIDPNSVAFPLSQGDKLGSGN 331
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -1
Query: 213 EPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQK 34
E HRC+ ++ H + L PA + R T+F LS+ + ++ + D R+
Sbjct: 523 ERFHRCMLACSAELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIR--HEDSLPREL 580
Query: 33 AREMTETRQRL 1
R + +RL
Sbjct: 581 RRHLNSLEERL 591
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,485
Number of Sequences: 28952
Number of extensions: 291914
Number of successful extensions: 1222
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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