Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30711
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.52 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.91 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   4.9  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 504 PAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS*FQTTK------KPKGRKDNFGNIGAG 665
           P+   P+   Q  L++    +PS +P +  +NS   T +       PKG  D  G I  G
Sbjct: 406 PSCYSPESLMQQPLTLSPSSIPSGLPTYAHVNSPLGTEQYPSEAYPPKGYVDMEGRISEG 465

Query: 666 VKE 674
           +KE
Sbjct: 466 IKE 468


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
 Frame = +3

Query: 462 VPPPEP-----VEQRLPRIPAWAPPQKH*QDHLSIKGP----KLPSQIPKWPP 593
           +PPP P     +  + P IP+  PP    Q    +K P     LPS +P  PP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPA--QPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 419  STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTIAT 246
            ST  SAT SS +S A   A+  G ST+   +     ++  + A+   T GS  +++AT
Sbjct: 965  STAASATGSSTSSIA--TASVSGSSTSSVATASATDSSTSSIAAASVT-GSSTSSVAT 1019


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 580 GIWEGSLGPLIER*SC*CFWGGAHAGI 500
           GIW GSL P++ R    C W G  A I
Sbjct: 127 GIW-GSLWPILNRAVMACVWYGVQAWI 152



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 685 FKRLSLTP-APILPKLSFLPFGF 620
           F R + TP API P+L  +P GF
Sbjct: 275 FTRFATTPNAPIFPQLITIPMGF 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,808
Number of Sequences: 5004
Number of extensions: 50059
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)