Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30711
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 32 0.41
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.95
03_05_0576 + 25765137-25766420 31 1.3
08_02_0229 - 14540302-14540736 30 2.2
04_03_0803 - 19835284-19836050,19836337-19836418 30 2.2
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 30 2.2
03_06_0316 + 33091194-33091370,33091451-33092155 29 2.9
02_05_0496 - 29499959-29500653,29501039-29501093 29 2.9
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 3.9
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 5.1
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 5.1
03_01_0515 - 3864796-3865425 29 5.1
04_04_0063 - 22441549-22442961 28 6.7
04_03_0902 + 20707834-20708187 28 8.9
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 28 8.9
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 28 8.9
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPP 593
PP EP R +PAW PP + + LS + SQ+ W P
Sbjct: 90 PPLEPSAPRTMLVPAWEPPFRRRRPPLSSSSSRQESQV--WDP 130
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -3
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
V+T SA S +S A AAAA G T + + SA+ GNAAS A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154
>03_05_0576 + 25765137-25766420
Length = 427
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS*FQTTKKPKGRKDN 644
P P P P P PP +S+ P P P+ PP+ + + ++PKGR
Sbjct: 73 PSPSPSPPPQPSSPPPPPPSPPPAAAVSVSPPTQPRPRPELPPVEAVLR--RQPKGRVFG 130
Query: 645 FG 650
G
Sbjct: 131 LG 132
>08_02_0229 - 14540302-14540736
Length = 144
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 366 CRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAADRGR 217
CRR+G R Q++ RR+G C G G +N++V AAD GR
Sbjct: 71 CRRRGGTSGGLRGKQRAGRRRGGGCDAGGGDGTAG-RRANAAVGAADDGR 119
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQ---IPKWPP 593
PPP PV P P + PP +H Q + P+Q PK PP
Sbjct: 128 PPPPPVPLPYPWPPCYYPPMQHCQTSSTTWTGSCPTQCHCCPKPPP 173
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 462 VPPPEPVEQ--RLPRIPAWAPPQKH*QD-HLSIKGPKLPS-QIPKWPP 593
VPP PV LPR P +APP + + H + P +P Q P PP
Sbjct: 306 VPPSAPVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVPQPQAPPAPP 353
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
++T ++ATE + +E AAA + +T + + AK AA RKA
Sbjct: 1 MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48
>02_05_0496 - 29499959-29500653,29501039-29501093
Length = 249
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +3
Query: 450 IYVHVPPPEPVEQRLPRIPAWAPP-----QKH*QDHLSIKGPKLPSQIPKWPPINS*FQT 614
+YV +PP EP Q+ P PP Q+H +H + P Q P P ++
Sbjct: 61 VYV-IPPAEPPHQQSPEPQPQTPPPPAQQQQHGPEHEHHQAQPQPQQEPPPPAQDAPPAE 119
Query: 615 TKKPK-GRKDNFGNIGAG 665
K PK G+ G + G
Sbjct: 120 PKPPKRGKNKKSGRVRFG 137
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
KRST+ S+ S+ + A AAA STT T + S+A AA+ A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPI 596
PP +P+ LP+ PA PPQ ++ P+ P+ P P+
Sbjct: 555 PPHDPLAPSLPQAPAATPPQDP-----ALTPPRAPTPTPPQAPL 593
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = -3
Query: 536 LLMFLGWSPRRDTRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 357
L +L SP+ T +++N Y N D+ ++ S S ++ A + ++ AA
Sbjct: 1265 LTKYLSLSPQDSTETTIINLLRILYTNPDLLYHESSISTSNQLVAVLRLGSRNSRLNAAR 1324
Query: 356 KGESTTETESIRRVSAA 306
++ ++E+IR A
Sbjct: 1325 TLQNLFDSENIRDTEVA 1341
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAP 518
PPP PV+ P PAW+P
Sbjct: 107 PPPSPVKSSPPPPPAWSP 124
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 419 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTT 255
+T +AT S + A+TA+ A S+R VS+AKG AAS + T + T
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRT 366
>04_03_0902 + 20707834-20708187
Length = 117
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 468 PPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPI 596
PP+ E RLP P PP ++ H P+ P P PP+
Sbjct: 33 PPKTKEHRLPSHPDKPPPYRN--SHTKTNTPRTPLYAPP-PPL 72
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 425 RVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
+VST + A E I + TAAAA+ E E + + A G +A
Sbjct: 127 KVSTLLPADEEEIKPKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEA 175
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +2
Query: 80 GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 193
G + T L+W+ P+WL W M AA N+ AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,098,236
Number of Sequences: 37544
Number of extensions: 364955
Number of successful extensions: 1496
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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