Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30711
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 31 0.74
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 31 1.3
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38340| Best HMM Match : Hexokinase_1 (HMM E-Value=0) 29 3.0
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8) 29 3.9
SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10) 28 9.1
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 431 SSCTETHLCSRTSPRT-S*AKTSSYPCVGSTPETLTRSSFNQGPQTSLPN 577
++ T+ S T T + +TSS G T T T++S N GP TS PN
Sbjct: 402 TTSTQPQTSSTTGSSTLTQPETSSTSNTGPTTSTQTQTSSNTGPTTSTPN 451
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 376 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSLR 510
A +V + D++V L LL NTSMF+ QN +SK ++ L+
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKLK 307
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 440 TETHLCSRTSPRTS*AKTSSYPCVGSTPETLTRSSFNQGPQTSLPNS*MAPHKFLIPNHQ 619
T+ TSP+ S KTSS ++P+T ++S P+TSL S K +
Sbjct: 140 TDRKKSRNTSPKRS-PKTSSKSSPKTSPKTSLKTSSKTSPKTSLNTSRKTSRKTSLKRSL 198
Query: 620 KTERK 634
KT K
Sbjct: 199 KTSTK 203
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 1 LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 162
+SH + + + +IGY +YHRV S I L +SS H++ F+ L G P
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696
Query: 163 PPVGYSYSAPR 195
P +GY S R
Sbjct: 697 PIIGYPTSYHR 707
>SB_38340| Best HMM Match : Hexokinase_1 (HMM E-Value=0)
Length = 418
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 606 IRNLWGAI*EFGREVWGP*LKDDLVNVSGVEPTQG-YEEVFAQLVLGEVREHRCVSV 439
I WGA + G W D ++V + P Q +E++ + + LGE+ H C+ +
Sbjct: 239 INTEWGAFGDSGVLNWIITEHDKKIDVESINPGQQVFEKMISGMYLGELARHICMDL 295
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 434 SCTETHLCSRTSPRTS*AKTSSYPCVGSTPETLTRSSFNQGPQT 565
S T T S ++PRT T+S P +T + TR+ P+T
Sbjct: 91 STTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRT 134
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -3
Query: 458 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 288
N D+F +++ + + R S T+S+I + +A TT++++I + A++G
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552
Query: 287 RKAT*GSRMTTIATVL 240
+K T SR +++ + L
Sbjct: 553 KKNT--SRPSSVTSSL 566
>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
Length = 520
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 609 QTTKKPKGRKDNFGNIGAGVKESLLKKQALGN 704
Q TK+P+ K N GNI G E+ KK+ N
Sbjct: 189 QKTKQPQNGKTNAGNINQGTSEAEPKKRTPKN 220
>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 182 TPLPEVTQEA-SALPLSAADTELLLWWS---FWIPRWPFWRQHFP 304
TPLP T + + P DT + W + +W P P+W + P
Sbjct: 29 TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 468 PPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLP 569
PPEP EQ + R P + ++ + H +++ +LP
Sbjct: 638 PPEPSEQDMARTPQYGYEERRTEIHRTVQPTELP 671
>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 609 QTTKKPKGRKDNFGNIGAGVKESLLKKQ 692
Q TK+P+ K N GNI G E+ K++
Sbjct: 24 QKTKQPQNGKTNSGNINQGTSEAETKEK 51
>SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 609 QTTKKPKGRKDNFGNIGAGVKESLLKKQ 692
Q TK+P+ K N GNI G E+ K++
Sbjct: 172 QKTKQPQNGKTNAGNINQGTSEAETKEK 199
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -3
Query: 431 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTI 252
+T ++ ++A+ +S+ + T AAA + T + + A AA+ A+ S +T
Sbjct: 1121 ATTIAAAVTASTASVVTTTATVAAATTTAEKATTTTAAMVKATTTAAAVTASTASVVTKT 1180
Query: 251 ATV 243
ATV
Sbjct: 1181 ATV 1183
>SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)
Length = 785
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 609 QTTKKPKGRKDNFGNIGAGVKESLLKKQ 692
Q TK+P+ K N GNI G E+ K++
Sbjct: 24 QKTKQPQNGKTNSGNINQGTSEAETKEK 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,581,828
Number of Sequences: 59808
Number of extensions: 377056
Number of successful extensions: 1217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -