Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30711
         (739 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3 prot...    33   1.1  
U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.                  33   1.1  
U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.     33   1.1  
BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome associ...    33   1.1  
AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3 pr...    33   1.1  
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              32   1.9  
Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   31   3.3  
AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome associ...    31   3.3  
AY279347-1|AAQ62844.1|  697|Homo sapiens zinc finger protein 434...    30   7.5  
AY261676-1|AAP57398.1|  485|Homo sapiens zinc finger protein pro...    30   7.5  
BC037404-1|AAH37404.1| 1015|Homo sapiens formin binding protein ...    30   10.0 
AL158155-2|CAI13847.1|  395|Homo sapiens glyoxylate reductase/hy...    30   10.0 
AK026287-1|BAB15430.1|  252|Homo sapiens protein ( Homo sapiens ...    30   10.0 
AK022987-1|BAB14348.1|  560|Homo sapiens protein ( Homo sapiens ...    30   10.0 
AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.                30   10.0 
AB023231-1|BAA76858.2| 1050|Homo sapiens KIAA1014 protein protein.     30   10.0 

>Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3
           protein.
          Length = 711

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 625 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 668


>U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.
          Length = 743

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 657 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 700


>U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.
          Length = 99

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 13  SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 56


>BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome
           associated protein protein.
          Length = 717

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


>AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3
           protein.
          Length = 717

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 419 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTIAT 246
           ST  S T S+ ++   +  +A   STT T    + SAA  +  S   T  S +TT +T
Sbjct: 413 STTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTST 470


>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+    + D
Sbjct: 500 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 543


>AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome
           associated protein variant protein.
          Length = 717

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
           +R R +GR H+RDR H++SV R+     ++   G++  H S+    + D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 674


>AY279347-1|AAQ62844.1|  697|Homo sapiens zinc finger protein 434
           protein.
          Length = 697

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -3

Query: 584 FRNLGGKFGALD*KMILLMFLGWSPRRDTRKSLLNWFWGRYVNIDVFLYKRSTRV---ST 414
           FRN G +   LD  ++    LG+  + + +K  L W     V I+  L ++S  V   S 
Sbjct: 391 FRNPGQEVRKLDLPVLFPNRLGFEFKNEIKKENLKWDDSEEVEINKALQRKSRGVYWHSE 450

Query: 413 RISATESSITSEAQTAAAAKGESTTETESIRRVS 312
                ES  TS  Q    + GES  +T S  ++S
Sbjct: 451 LQKGLESEPTSRRQ-CRNSPGESEEKTPSQEKMS 483


>AY261676-1|AAP57398.1|  485|Homo sapiens zinc finger protein
           protein.
          Length = 485

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -3

Query: 584 FRNLGGKFGALD*KMILLMFLGWSPRRDTRKSLLNWFWGRYVNIDVFLYKRSTRV---ST 414
           FRN G +   LD  ++    LG+  + + +K  L W     V I+  L ++S  V   S 
Sbjct: 179 FRNPGQEVRKLDLPVLFPNRLGFEFKNEIKKENLKWDDSEEVEINKALQRKSRGVYWHSE 238

Query: 413 RISATESSITSEAQTAAAAKGESTTETESIRRVS 312
                ES  TS  Q    + GES  +T S  ++S
Sbjct: 239 LQKGLESEPTSRRQ-CRNSPGESEEKTPSQEKMS 271


>BC037404-1|AAH37404.1| 1015|Homo sapiens formin binding protein 4
            protein.
          Length = 1015

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 465  PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPI 596
            PPP P     P++P     +K  +D       K+PS + KW  I
Sbjct: 908  PPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSI 951


>AL158155-2|CAI13847.1|  395|Homo sapiens glyoxylate
           reductase/hydroxypyruvate reductase protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 721 FGGIN*LPRACFFKRLSLTPAPILPKLSFLPFGFLVVWN*EFMGGH 584
           F  I+  PRA    +    P+P+LP   FLP G LV    E  G H
Sbjct: 240 FINISRYPRATLPSKPGEEPSPLLPSGDFLPRGLLVRPQAELAGFH 285


>AK026287-1|BAB15430.1|  252|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22634 fis, clone HSI06565. ).
          Length = 252

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 721 FGGIN*LPRACFFKRLSLTPAPILPKLSFLPFGFLVVWN*EFMGGH 584
           F  I+  PRA    +    P+P+LP   FLP G LV    E  G H
Sbjct: 97  FINISRYPRATLPSKPGEEPSPLLPSGDFLPRGLLVRPQAELAGFH 142


>AK022987-1|BAB14348.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12925 fis, clone NT2RP2004710, highly similar to
           Mus musculus formin binding protein 30 mRNA. ).
          Length = 560

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 465 PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPI 596
           PPP P     P++P     +K  +D       K+PS + KW  I
Sbjct: 453 PPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSI 496


>AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 372 NRCRRQGRVHHRDRVHQKSVRRQ 304
           +R R +GR H+RDR H++SV R+
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK 653


>AB023231-1|BAA76858.2| 1050|Homo sapiens KIAA1014 protein protein.
          Length = 1050

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 465  PPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPI 596
            PPP P     P++P     +K  +D       K+PS + KW  I
Sbjct: 943  PPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSI 986


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,414,931
Number of Sequences: 237096
Number of extensions: 2074566
Number of successful extensions: 6536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6527
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)