Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30711
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.086
At5g28120.1 68418.m03396 hypothetical protein 30 1.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 1.8
At3g30816.1 68416.m03949 hypothetical protein 30 1.8
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 1.8
At4g36890.1 68417.m05230 glycosyl transferase family 43 protein ... 29 2.4
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 3.2
At4g05300.1 68417.m00803 hypothetical protein 29 4.3
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put... 28 5.6
At5g28110.1 68418.m03395 hypothetical protein 28 7.4
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 7.4
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 7.4
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 28 7.4
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 7.4
At5g39080.1 68418.m04728 transferase family protein similar to a... 27 9.8
At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar t... 27 9.8
At5g02840.2 68418.m00227 myb family transcription factor contain... 27 9.8
At5g02840.1 68418.m00226 myb family transcription factor contain... 27 9.8
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 27 9.8
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph... 27 9.8
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 27 9.8
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 464 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 312
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 285
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS 602
VH PPP PV P P ++PP S P + S P+ P INS
Sbjct: 602 VHSPPP-PVHSPPPPPPVYSPPPPVFSPPPSQSPPVVYSPPPRPPKINS 649
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 282
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 434 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 282
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At4g36890.1 68417.m05230 glycosyl transferase family 43 protein low
similarity to Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase 1, Homo sapiens
[SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
Pfam domain Glycosyltransferase family 43 [PF03360]
Length = 525
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 131 PVWLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLLWW 259
P W+ +LN +PL + + PL + ++LLWW
Sbjct: 381 PEWVKDFGSLNENEGVESPLSLLKDPSMVEPLGSCGRQVLLWW 423
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS 602
VH PPP P P P ++PP + P P P PP++S
Sbjct: 644 VHSPPPPPPVHSPPP-PVFSPPPPMHSPPPPVYSPPPPVHSPPPPPVHS 691
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS 602
V PPP PV P P ++PP + P P P PP++S
Sbjct: 731 VQSPPPPPVFSPPPPAPIYSPPPP------PVHSPPPPVHSPPPPPVHS 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPPINS 602
VH PPP PV P P +PP + P P P PP++S
Sbjct: 681 VHSPPPPPVHS--PPPPVHSPPPPVHSPPPPVHSPPPPVHSPP-PPVHS 726
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 282
++S R STRISA+E + S KGEST E+ +R KG++ +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354
>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from [Arabidopsis thaliana]
Length = 675
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 WLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLLWWSFWIPRWPFWRQ-HF 301
W LN+ T LP+ +A PL+A T L + W+ P PF+ HF
Sbjct: 29 WTQVTTNLNVNISTIYELPQSVMSTAATPLNANAT-LNITWTIEPPTTPFYSYIHF 83
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 285
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 276
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 485 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 312
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPRIPAWAP 518
P++Q Y+H PPP+P Q P P+ P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDP 363
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPAWAPP 521
+H PPP PV P P ++PP
Sbjct: 507 IHSPPPPPVYSPPPPPPVYSPP 528
>At5g39080.1 68418.m04728 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 463
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = +1
Query: 67 VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 186
VSS S SSK ++ FV VL C+ A G P PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317
>At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar to
GI:3426064; identical to cDNA monooxygenase 3, partial
GI:3426065
Length = 406
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 380 EAQTAAAAKGESTTETESIRRV-SAAKGNAASRKAT*GSRMTTIATV 243
EA A KGE+ E ES RR+ K A SRK +TT TV
Sbjct: 319 EAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKWRSIDLITTSYTV 365
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 438 VQKH-IYVHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPP 593
VQK+ HVPPP P + P A H+S+ P + +P + P
Sbjct: 96 VQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNLPGYTP 148
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 438 VQKH-IYVHVPPPEPVEQRLPRIPAWAPPQKH*QDHLSIKGPKLPSQIPKWPP 593
VQK+ HVPPP P + P A H+S+ P + +P + P
Sbjct: 96 VQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNLPGYTP 148
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 467 SPRTS*AKTSSYPCVGSTPETLT--RSSFNQGPQTSLPNS 580
SP S A TS Y C +PE L S+ QG Q+ L +S
Sbjct: 401 SPSHSSASTSPYRCFQKSPEVLPAFMSNLRQGLQSQLLSS 440
>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 499
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 663 QHQYYRSCLSFLSVFWWFGIRNLWG 589
QHQ ++SC +F SVF G+ ++G
Sbjct: 357 QHQQFQSCTAFTSVFNNTGLFGIYG 381
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPAWAPPQK 527
PPP P + P P APPQK
Sbjct: 32 PPPPPPHHQAPLPPLEAPPQK 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,529
Number of Sequences: 28952
Number of extensions: 277582
Number of successful extensions: 1268
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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