Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30710
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 30 0.27
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 28 1.4
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 1.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.9
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 1.9
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 4.4
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 26 5.8
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 7.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.7
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 30.3 bits (65), Expect = 0.27
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 201 QKEQSKESENITRSRTRIVEIQEAD--VGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLS 374
Q++Q ++ E I R R + + + V + D+++ D + GI D EN S
Sbjct: 1422 QEKQKRDEELIKARRKRALPVVPSKPVVEVFNDLNEAFDDENSEDENGINDTKENRATES 1481
Query: 375 SKSSNEIRPRRQIDLENIFPGDDDSFEELLISFFENHNALKDKKVLK 515
+ S + + + ++ + ++FE++ F+N + L++++ L+
Sbjct: 1482 NFSGVDSMSKERENVSSNEDNSPEAFEDIFGILFKNESGLEEQQNLE 1528
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 453 EELLISFFENHNALKDKKVLKMLIMGQISTGV--ISL*GDGVTDR 581
E +++S FEN NALK + L L + S G +S DG DR
Sbjct: 1225 ETIVVSMFENRNALKKEVHLDFLFKYEPSAGYSPVSEILDGRNDR 1269
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 TESPTTPMNLIIQ-GHSKVKT--YSSKPNPVNE--YHDFKNEIPKPNETTEVKHLH 153
TE+ +T +L Q G K T YS+K + E YH F+N PKPN T V L+
Sbjct: 686 TENLSTTASLFQQHGPPKKSTDCYSAKASAAVERKYH-FQNMTPKPNGTNSVTTLN 740
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 282 IKYDVSDGSDVPVEIYKKGIVDNDENAYKL-SSKSSNEIR-PRRQIDLENIFP-GDDDSF 452
+ D + +D P+ ++ D NA + S K+S EI P QID +++ P D S
Sbjct: 1397 VSIDEATQTDFPL-VFSPERSSIDINASSMRSEKASFEIPFPEEQID-DDVSPVAQDSSL 1454
Query: 453 EELLIS 470
EELLIS
Sbjct: 1455 EELLIS 1460
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 144 FHFSCFVWFWNFVFEIVILI-NGIRF 70
F F C++ W+ +F +I I NG+ F
Sbjct: 121 FPFLCWICLWSMIFHFIIAIANGVYF 146
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 312 VPVEIYKKGIVDNDENAYKLSSKSSNEIR 398
+PVE G VD D L+SK SNE R
Sbjct: 35 IPVEWKWYGSVDEDSGYVYLTSKDSNEAR 63
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 343 LITMKMLISYPANHLMKFGQEGKSILKIF 429
L T ++ +P NH FGQE KS +F
Sbjct: 180 LTTTLSILPFPVNHGSSFGQELKSSAFLF 208
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 368 LISIFIVINYPFLIDFDRYVTPITNIVFYTDICF 267
++ IF V+ PFL + + I+N F+ CF
Sbjct: 31 ILEIFSVLFIPFLCNSGKKFLQISNASFFLPACF 64
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/50 (20%), Positives = 25/50 (50%)
Frame = +1
Query: 1 TESPTTPMNLIIQGHSKVKTYSSKPNPVNEYHDFKNEIPKPNETTEVKHL 150
T P+TP++ + G + ++ +++P P ++ + P + T + L
Sbjct: 45 TPKPSTPLSTLTNGSTIQQSMTNQPEPTSQVPPISAKPPMDDATYATQQL 94
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 285 KYDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPGDD 443
KY + D + +Y + ++ND + L + ++ R++ + IFP D
Sbjct: 902 KYRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGD 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,512
Number of Sequences: 5004
Number of extensions: 50493
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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