Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30710
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 33 0.28
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 31 1.1
11_06_0291 + 22008412-22012284 30 2.0
03_02_0023 + 5065962-5066079,5066179-5067614 30 2.0
11_06_0289 - 21969248-21973516 29 2.6
11_06_0185 + 21018045-21022307 29 2.6
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 29 3.4
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 29 4.5
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203... 28 6.0
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 28 6.0
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 6.0
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 32.7 bits (71), Expect = 0.28
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +3
Query: 309 DVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPGDDDSFEELL--ISFFEN 482
DVP I K I++N+EN +S+ + E+ + I + IF + S +L +F+EN
Sbjct: 570 DVPNNILKHIILENNENKPVTNSRDTQEVNLDQGIQMLKIFK-EHVSKTSILDDFAFYEN 628
Query: 483 HNAL-KDKKVLKMLIMGQI 536
L ++K+V + I Q+
Sbjct: 629 RQKLMQEKRVKQQQIQKQV 647
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 390 EIRPRRQIDLENIFPGDDDSFEELL 464
E+R RR++DL + PGD S EE+L
Sbjct: 202 EVRGRRKLDLARVSPGDGRSREEVL 226
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 269 FLNFDDPSPRSSNVLRFFALFFLLMSSEIIFLELLPLNGCRCF 141
F F+D RSS+ ++ F L SS + L++L L GC+CF
Sbjct: 920 FSIFNDLRLRSSDRIQTF-FQSLSQSSRVSLLKVLDLEGCQCF 961
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 216 KESENITRSRTRIVEIQEADVGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEI 395
K S++ + R+++I++A VGI D SDG DV V I + E +K N
Sbjct: 224 KTSDSPDEAEDRLLDIKKA-VGIPEDASDGEDV-VAIVRANKASQGEGVWK--ELLLNPT 279
Query: 396 RPRRQI 413
RP R++
Sbjct: 280 RPVRRM 285
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 269 FLNFDDPSPRSSNVLRFFALFFLLMSSEIIFLELLPLNGCRCFTS 135
F F+D RSS+ + F L SS + L++L L GC+CF S
Sbjct: 932 FSIFNDLRLRSSDRIGTF-FQGLSRSSRVSLLKVLDLEGCQCFAS 975
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 269 FLNFDDPSPRSSNVLRFFALFFLLMSSEIIFLELLPLNGCRCFTS 135
F F+D RSS+ + F L SS + L++L L GC+CF S
Sbjct: 930 FSIFNDLRLRSSDRIGTF-FQGLSRSSRVSLLKVLDLEGCQCFAS 973
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 EIQEADVGIKYDVSDGSDVPVE-IYKKGIVDNDENAYK 368
E +E + + YDV DG D P E G+ +D + YK
Sbjct: 47 EYEEEEEELLYDVDDGEDAPAEACVLTGVKHSDGSIYK 84
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +3
Query: 288 YDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENI 428
Y +++ D+ ++I +KGIVD D ++ + ++ R + +D+ +
Sbjct: 620 YPLAESRDIQIKIEEKGIVDIDNWLHQQIVEKTSTFRSKMVLDIPGV 666
>10_07_0044 +
12319382-12319532,12319978-12320163,12320247-12320396,
12320495-12320644,12320728-12321417,12321641-12322033,
12322073-12322546,12322634-12323974,12324042-12324388
Length = 1293
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 288 YDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLEN 425
YD+++GS+ P+ +G N+ L++ S + + RR LEN
Sbjct: 237 YDLNEGSEEPLSYIVQGETQNNNETDFLATNSGQDTQSRR-TSLEN 281
>06_02_0107 -
11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 242 RSSNVLRFFALFFLLMSSEIIFLELLPLNGCRCF 141
R+S+ + F SS++ L+LL L GC+CF
Sbjct: 712 RASDSIDMFVKKLHNYSSQLSLLKLLDLQGCQCF 745
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 162 FKWMQMFHFSCFVWFWNFVFEIVILINGIRFGTIG 58
F W +FHF ++ FW F V+L++ I +G
Sbjct: 168 FLWKPVFHFILWMLFWTF---YVLLLSSIVLNKVG 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,790
Number of Sequences: 37544
Number of extensions: 270800
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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