Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30710
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              30   1.5  
SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            29   3.5  
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)                 29   4.6  
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.6  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                29   4.6  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   4.6  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)                     28   6.1  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       28   8.1  
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 366 KLSSKSSNEIRPRRQ-IDLENIFPGDDDSFEELLISFF 476
           K+S+K+ N  +PRRQ +DLE +  GDD S  E+++  +
Sbjct: 122 KISAKNWNTRKPRRQFLDLE-VLKGDDMSESEVMLQCY 158


>SB_56916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 315 PVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLE--NIFPGDDD 446
           P E      +D D+N  KL     N+++    ID E   I PGD+D
Sbjct: 32  PTENKPAAQLDPDKNLNKLGDDELNKVKAAMDIDFEKNRIRPGDED 77


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 483 HNALKDKKVLKMLIMGQISTGVISL*GDGVTD-REGRKV*TEFG 611
           H  + D  +   +++G  S+GVI   G+GV+D +EG +V  E G
Sbjct: 41  HGCIGDFVLTAPMVLGHESSGVICAVGEGVSDLKEGDRVAIEPG 84


>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
          Length = 1387

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +2

Query: 38  KVIRRSKPIVPNRIPLMSITISK 106
           K ++RS   VPNR+P+MS+T+++
Sbjct: 24  KRVKRSMFEVPNRLPMMSLTLAQ 46


>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 314 YVTPITNIVFYTDICFLNFDDPSPRSS---NVLRFFALFFLLMSSEIIFLELLPLNG 153
           ++ P T I F   + F+  D+   R +    +L   A+FFL++ + +   ++LPL G
Sbjct: 711 FILPCTIIAFLMLLVFMTPDNTGERMAVGVTILLSLAVFFLMLEAIMPISQMLPLLG 767


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 291  DVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIR-PRRQIDLENI 428
            DV   SD+ ++  K  I DND++      K+   ++  R+++D+ENI
Sbjct: 1355 DVVADSDIVLDYKKTQISDNDKDESNDKDKTKTPLKLSRKKMDVENI 1401


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -2

Query: 272 CFLNFDDPSPRSSNVLR---FFALFFLLMS--SEIIFLELLPLNGCRCFTSVVSF 123
           CF  +  P P SS+VLR   FF+LF  ++S  S  +    + L+  RC T  +SF
Sbjct: 229 CFCRYAPPLPSSSSVLRVIPFFSLFRAILSVPSPPLRARCVSLSLSRC-TREISF 282


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +3

Query: 195  HKQKEQSKESENITRSRTRIVEIQEA--DVGIKYDVSDGSDVPVEIYKKGIVDNDENAYK 368
            +K KE++ +S N+   R  + +I++   D+GI+  V D  +V  + +   +++N+   ++
Sbjct: 2767 NKYKEKASDSANVAVLREELEDIKKLRQDMGIQELVLDFINVKGQEFSGKVMENEH--FE 2824

Query: 369  LSSKSSNE 392
            L  K++N+
Sbjct: 2825 LDLKATND 2832


>SB_27924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 318 VEIYKKGIVDNDENAYKLSSKSSNEIR-PRRQIDLENIFPGD 440
           VEI ++G+ + DE   KL+ +  +E R P R++ L+  F GD
Sbjct: 11  VEIAREGLKNVDETIKKLTGRDPSEFRPPGRRVSLKRDF-GD 51


>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
          Length = 1182

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +3

Query: 291 DVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPGDDDSFEELLIS 470
           D  DG+ V  +I ++ IVD DE + K S   S    P   I       G D   E ++  
Sbjct: 539 DGGDGTPVKDDIEEEEIVDEDERSVKYSHHESGGPFPAFFIARFGAVSGSDSVLERVVPL 598

Query: 471 FFENHNALKDKKVLKMLIMGQIST 542
            F    AL+   +++  ++   +T
Sbjct: 599 LF--LKALETSSLIEFFLLSAKTT 620


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 634  ETMNQLYNPNSV*TFLPSLSVTPSPYRDITPVLI-*PIINILSTFLSFN 491
            ETM Q  N  S      SL +T SP+R  + +L+   +I + S F+S N
Sbjct: 1724 ETMRQSSNDGSEEGIAVSLFLTHSPHRSSSRILLDFNLIGVFSDFVSVN 1772


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 195 HKQKEQSKESENITRSRT 248
           HKQ E+SK++++ TRSRT
Sbjct: 610 HKQTERSKQAQDNTRSRT 627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,938
Number of Sequences: 59808
Number of extensions: 319437
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)