Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30710
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    29   3.1  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   5.4  
U97005-9|AAK72085.1|  829|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    27   9.4  

>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 303 GSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPGDD 443
           G+ +P ++Y KG+ DND     LSS S +E+      DL N F  D+
Sbjct: 37  GTQLPSKVYNKGLKDNDIEGL-LSSLSIDELE-----DLNNDFDPDN 77


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 393  IRPRRQIDLENIFPGDDDSFEELLISFFENHNALKDKK 506
            I   R++ +E++ P D    EELL   +E    +KDKK
Sbjct: 1152 IEKTRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKK 1189


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 393  IRPRRQIDLENIFPGDDDSFEELLISFFENHNALKDKK 506
            I   R++ +E++ P D    EELL   +E    +KDKK
Sbjct: 1152 IEKTRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKK 1189


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 393  IRPRRQIDLENIFPGDDDSFEELLISFFENHNALKDKK 506
            I   R++ +E++ P D    EELL   +E    +KDKK
Sbjct: 1152 IEKTRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKK 1189


>U97005-9|AAK72085.1|  829|Caenorhabditis elegans Hypothetical
           protein F19F10.9 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 216 KESENITRSRTRIVEIQEADVGIKYDVSDGSDVPVEIYKKGIVD--NDENAYKLSSKSSN 389
           K  E     R R    +  D G+K +  DG D   EI  K + +  +D   +K + + + 
Sbjct: 372 KAGEGRDFGRRRRDSDEPEDEGLKKEKQDGKDEDGEISDKEVPESSSDNGKWKKAMRGNG 431

Query: 390 -EIRPRRQIDLENIFPGDDDSFEELLIS 470
            +++  +++  ++    DDDS  +L+ S
Sbjct: 432 VDLQRLQKLRSKHQIAEDDDSDNDLMFS 459


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +3

Query: 207  EQSKESENITRSRTRIVEIQEADVGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSS 386
            EQS++      S+ + +E     V  +  VS  SDV +E   K ++D   +  K S    
Sbjct: 974  EQSQQQNQQQNSQKQFLEFHHPHVPQR--VSSQSDVDMEAIFKTVIDASRSQQKESQTKQ 1031

Query: 387  NEIRPRRQIDLENI 428
             +   ++Q D E I
Sbjct: 1032 QQQPQQQQYDNEVI 1045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,786
Number of Sequences: 27780
Number of extensions: 266752
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)