Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30710
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   0.89 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    25   0.89 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    25   0.89 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    25   0.89 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.89 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.89 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.3  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   ESPTTPMNLIIQGHSKVKTYSSKPNPVNEYHDFKNEIPK 120
           +S  T +  +I G ++  T SS+   V    DF NEIPK
Sbjct: 132 DSDVTTLPTLI-GKNETSTQSSRS--VESVEDFDNEIPK 167


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   ESPTTPMNLIIQGHSKVKTYSSKPNPVNEYHDFKNEIPK 120
           +S  T +  +I G ++  T SS+   V    DF NEIPK
Sbjct: 180 DSDVTTLPTLI-GKNETSTQSSRS--VESVEDFDNEIPK 215


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   ESPTTPMNLIIQGHSKVKTYSSKPNPVNEYHDFKNEIPK 120
           +S  T +  +I G ++  T SS+   V    DF NEIPK
Sbjct: 180 DSDVTTLPTLI-GKNETSTQSSRS--VESVEDFDNEIPK 215


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   ESPTTPMNLIIQGHSKVKTYSSKPNPVNEYHDFKNEIPK 120
           +S  T +  +I G ++  T SS+   V    DF NEIPK
Sbjct: 180 DSDVTTLPTLI-GKNETSTQSSRS--VESVEDFDNEIPK 215


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 217 KNLRTLLDRGLGSSKFKKQMSV*NTMLVMG 306
           K ++TL DRG+ SSK +  +SV    + +G
Sbjct: 11  KEIKTLPDRGMWSSKIEFILSVVGLAIGLG 40


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 217 KNLRTLLDRGLGSSKFKKQMSV*NTMLVMG 306
           K ++TL DRG+ SSK +  +SV    + +G
Sbjct: 64  KEIKTLPDRGMWSSKIEFILSVVGLAIGLG 93


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 73  PNPVNEYHDFKNEIPKPNETTEV 141
           P P  +YHD+  + P+   T  V
Sbjct: 322 PPPNLDYHDYSRQFPRDLTTQTV 344


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 DDDSFEELLISFFENHNALKDKKVLKML 521
           +DD  +  LI FF N N    ++ + ML
Sbjct: 298 NDDDIKSYLIQFFANKNQKFYERGIMML 325


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 391 KFGQEGKSILKIFFLETMIVLK 456
           +FG +GK I+  F +   I++K
Sbjct: 256 QFGAQGKLIVDFFMILNEIIMK 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,978
Number of Sequences: 438
Number of extensions: 3847
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)