Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30710
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 35 0.058
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 29 2.9
At1g11880.1 68414.m01370 expressed protein contains Pfam profile... 29 2.9
At5g27010.1 68418.m03222 hypothetical protein 28 5.0
At1g18840.1 68414.m02346 calmodulin-binding family protein low s... 28 5.0
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 6.6
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 27 8.8
At5g52790.1 68418.m06551 CBS domain-containing protein-related c... 27 8.8
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi... 27 8.8
At3g15050.1 68416.m01904 calmodulin-binding family protein simil... 27 8.8
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 34.7 bits (76), Expect = 0.058
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 279 GIKYDVSDGSDVPVEIYK-KGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPGDDDSFE 455
GI + S GS P E + + +VD+++ ++SS++S R R + DLE D++ E
Sbjct: 28 GIFRNASSGSTNPEEDFLGRRVVDDEDRTVEMSSENSGPTRSRSEEDLEGEDHDDEEEEE 87
Query: 456 ELLISFFENHNALKDKK 506
E + + N K KK
Sbjct: 88 EDGAAGNKGTNKRKRKK 104
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 198 KQKEQSKESENITRSRTRIVEIQEADVGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLSS 377
K E+ KE + + I E+ + V D +PV I K+ +D DE + L
Sbjct: 371 KSAEKKKEIADAVQKELPIEEVSVSLVDAPEDEKMNL-IPVTISKESDLDKDEKSLVLDK 429
Query: 378 KSSNEIRPRRQIDL--ENIFPGD-DDSFEE 458
+E+R + D E + + DDS EE
Sbjct: 430 PEQDELRTAERDDKAEEELKTAERDDSAEE 459
>At1g11880.1 68414.m01370 expressed protein contains Pfam profile
PF04188: Protein of unknown function (DUF409)
Length = 489
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -2
Query: 344 NYPFLIDFDRYVTPITNIVFYTDICFLNFDDPSPRSSNVLRFFAL--FFLLMSSEIIFLE 171
++PFL+ + + N V + + FL + F L FF+ + S +F
Sbjct: 59 SFPFLVA-NAASRSLENSVVWDSVYFLRITECGYEYEQTYAFLPLLPFFISLLSRTVFAP 117
Query: 170 LLPLNGCRCFTSVVSFGFGISFL 102
L+PL G R +V GF +S L
Sbjct: 118 LVPLIGLRAV--MVLSGFTVSNL 138
>At5g27010.1 68418.m03222 hypothetical protein
Length = 863
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 343 LITMKMLISYPANHLMKFGQEGKSILKIFFLE 438
+++ K+L S+P NH F E +L FLE
Sbjct: 344 MLSKKLLGSFPLNHENNFSVENNGVLTEIFLE 375
>At1g18840.1 68414.m02346 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 572
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 213 SKESENITRSRTRIV--EIQEADVGIKYDVSDGSDVP-VEIYKKGIVDNDENAYKLSSKS 383
SK+ E I + +V +I+E+DV VSD S + +Y GIV+ ++ S
Sbjct: 23 SKDKERIVNGKEVVVISKIEESDV-----VSDLSSIGNAAVYTSGIVETQNLKHEDVSDD 77
Query: 384 SNEIRPRRQIDLENIFPGDDDSFEE 458
++ + D +++ DDS E
Sbjct: 78 EIQVSEVQPTDSQDVASVPDDSLSE 102
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +3
Query: 216 KESENITRSRTRI-VEIQEADVGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNE 392
KE E I ++ + +++QE V K E+ G+ + KL+ K +NE
Sbjct: 447 KEEEKIKKAMESLTLDLQEVSVEAKEAKEKLLTCQAELELCGV---QIESLKLAEKDTNE 503
Query: 393 IRPRRQIDLENIFPGDDDSFEELLISFFENHNALKDKKVLKMLIMGQISTGVISL 557
+ D N G S E FF + + +++ ML + ++ G S+
Sbjct: 504 KHGKMLEDARNEIDGLKSSLENTENEFFNSKTEWEQRELHLMLCVKKLEDGNFSV 558
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +3
Query: 258 EIQEADVGIKYDVSDGSDVPVEIYKKGIVDNDENAYKLSSKSSNEIRPRRQIDLENIFPG 437
E +E + G D DG+D E +G DN + + K E+R + Q L+N+
Sbjct: 79 ENKEDEDGESEDFEDGNDKESESGDEGNDDNKDAQMEELEKEVKELRSQEQDILKNL--K 136
Query: 438 DDDSFEELLISFFENHNALKDK 503
D + + +N AL DK
Sbjct: 137 RDKGEDAVKGQAVKNQKALWDK 158
>At5g52790.1 68418.m06551 CBS domain-containing protein-related
contains Pfam profile PF01595: Domain of unknown
function, weak hit to PF00571: CBS domain
Length = 500
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 MNLIIQ-GHSKVKTYSSKPNPVNEYHDFKNEIP-KPNETTEVKHL 150
M LI GHS++ YS PN + + KN I +P + T ++ L
Sbjct: 231 MGLIASAGHSRIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDL 275
>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1064
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 423 NIFPGDDDSFEELLISFFENHNALKDKKVLKMLIMGQIST 542
+++ +D+SF+E I EN + + LK L+ G + T
Sbjct: 58 SVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKT 97
>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 259
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 25 NLIIQGHSKVKTYSSKPNPVNEYHDFKNEI 114
N +IQGH+ + S+ N ++ ++D +N+I
Sbjct: 79 NSLIQGHTVMNQTSTALNVIHSWYDIQNQI 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,306
Number of Sequences: 28952
Number of extensions: 246807
Number of successful extensions: 665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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