Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30709
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.69 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.2  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   4.8  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   6.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 441 ESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLWGNQGS 575
           E I +    +   +V + R  K  T+F+ LL   T  +  GNQ S
Sbjct: 478 EKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNS 522


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 31  RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLA 138
           RGH+  +  L+   D N ++ GS+D+    W A +A
Sbjct: 241 RGHEIAVFSLTHKEDPNYWSQGSYDD----WLAEMA 272


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 31  RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLA 138
           RGH+  +  L+   D N ++ GS+D+    W A +A
Sbjct: 248 RGHEIAVFSLTHKEDPNYWSQGSYDD----WLAEMA 279


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 266 YCVVSIH*TPEIASLCPFK 210
           YC+ S H    + SL PFK
Sbjct: 307 YCLFSTHFCRTLGSLPPFK 325


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 230 LSRVFNGWIQHSTVQWLGPLIENLGL*F 313
           +  VFN    +   Q++G ++ N+G+ F
Sbjct: 231 IDEVFNNNFGYDKKQYIGVVVANVGVAF 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,157
Number of Sequences: 336
Number of extensions: 3686
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)