Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30709
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 325 LIPPKSQSQIFNKWSQPLDS--TVLYPSIEHP 236
           L+ PK   ++F +W   L+S  T L     HP
Sbjct: 436 LMQPKQPIKLFEQWKSILESGTTTLQTRTMHP 467


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 279 NHWTVLCCIHPL 244
           NHWTV+ C+  +
Sbjct: 305 NHWTVMRCVQAM 316


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 441 ESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLWGNQGS 575
           E I +    +   +V + R     T+F+ LL   T  +  GNQ S
Sbjct: 498 EKIQEIYLEALRAYVDNRRRPNPGTVFARLLSVLTELRTLGNQNS 542


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 183 VFWFTFLRSWMVFFFC*ACTPKTNIV 106
           V W  F   +++  FC  C P   +V
Sbjct: 338 VCWLPFFLMYVIVPFCPDCCPSDRMV 363


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 183 VFWFTFLRSWMVFFFC*ACTPKTNIV 106
           V W  F   +++  FC  C P   +V
Sbjct: 338 VCWLPFFLMYVIVPFCPDCCPSDRMV 363


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HPVCDVNVVFTILSVDLGSYSR 416
           HP  D+N ++ +   D+  YSR
Sbjct: 388 HPGKDINKLYGMTPSDIDKYSR 409


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HPVCDVNVVFTILSVDLGSYSR 416
           HP  D+N ++ +   D+  YSR
Sbjct: 388 HPGKDINKLYGMTPSDIDKYSR 409


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 183 VFWFTFLRSWMVFFFC*ACTPKTNIV 106
           V W  F   +++  FC  C P   +V
Sbjct: 338 VCWLPFFLMYVIVPFCPDCCPSDRMV 363


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HPVCDVNVVFTILSVDLGSYSR 416
           HP  D+N ++ +   D+  YSR
Sbjct: 326 HPGKDINKLYGMTPSDIDKYSR 347


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +3

Query: 492 VRWSKTKTLFSFLLDTTTRFKLWGNQGSPRNSTFMTLKRTRR 617
           ++W+  +     L+D+    +LWG   +  +  + T+ R  R
Sbjct: 478 IKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,460
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)