Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30709
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 54 6e-08
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 54 6e-08
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 49 2e-06
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 48 4e-06
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 48 4e-06
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 44 6e-05
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 44 1e-04
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 43 2e-04
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 42 4e-04
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 42 4e-04
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 42 4e-04
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 41 8e-04
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 41 8e-04
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 40 0.001
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 40 0.001
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 40 0.002
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 39 0.002
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 39 0.003
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 39 0.003
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 39 0.003
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 39 0.003
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 38 0.004
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 38 0.004
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 38 0.004
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 38 0.005
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 38 0.005
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 36 0.017
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 36 0.017
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 36 0.017
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 36 0.022
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 36 0.022
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 36 0.022
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 36 0.022
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 36 0.022
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 36 0.029
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 36 0.029
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 36 0.029
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 35 0.038
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 34 0.067
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 34 0.067
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 34 0.067
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 34 0.067
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 34 0.089
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 33 0.12
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 33 0.12
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 33 0.12
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.16
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 33 0.16
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 33 0.16
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 33 0.21
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.21
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 33 0.21
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 33 0.21
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.27
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.27
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.27
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.27
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 32 0.27
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 32 0.27
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 32 0.27
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 32 0.27
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 32 0.36
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 32 0.36
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 32 0.36
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 32 0.36
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.47
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 31 0.47
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 31 0.47
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 31 0.47
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 31 0.47
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 31 0.47
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 31 0.47
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 31 0.47
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 31 0.47
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 31 0.63
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 31 0.63
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 31 0.63
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 31 0.63
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 31 0.63
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 0.63
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 31 0.63
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 31 0.63
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 31 0.63
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 31 0.63
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 31 0.83
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.83
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 31 0.83
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 31 0.83
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 31 0.83
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 31 0.83
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 31 0.83
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 31 0.83
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 30 1.1
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 30 1.1
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 30 1.1
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 30 1.1
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 30 1.1
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 30 1.1
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 30 1.4
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 30 1.4
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 30 1.4
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 30 1.4
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 30 1.4
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 30 1.4
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 30 1.4
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 29 1.9
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 1.9
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 29 1.9
At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 1.9
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 1.9
At3g12150.1 68416.m01514 expressed protein 29 1.9
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 1.9
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 29 1.9
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 29 2.5
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 2.5
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.5
At2g47010.2 68415.m05873 expressed protein 29 2.5
At2g47010.1 68415.m05872 expressed protein 29 2.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.5
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 29 2.5
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 29 2.5
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 29 2.5
At1g73340.1 68414.m08489 cytochrome P450 family protein similar ... 29 2.5
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 29 2.5
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 29 3.3
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 3.3
At3g61250.1 68416.m06855 myb family transcription factor (MYB17)... 29 3.3
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 29 3.3
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 29 3.3
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 29 3.3
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 28 4.4
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 28 4.4
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 28 4.4
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 28 4.4
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 28 4.4
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 28 4.4
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 28 4.4
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 28 4.4
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 28 4.4
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 28 4.4
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 4.4
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 28 5.8
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 28 5.8
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 28 5.8
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 5.8
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 27 7.7
At4g32330.2 68417.m04600 expressed protein 27 7.7
At4g32330.1 68417.m04599 expressed protein 27 7.7
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +3
Query: 255 YNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITA-SADRHVRLYDP 431
++ + SS WDH ++ WD + G + KA VD ++++I A +D +R++DP
Sbjct: 283 HDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDP 342
Query: 432 RST-ESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLW 560
R S F+SH+ W+ + +W K+ + LW
Sbjct: 343 RKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLW 386
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSK------PEHGTT 192
RGH ++ +S GN S SWD + LW+ + + E + K + E +
Sbjct: 202 RGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESVSVKKRKGNNQAEESQSE 261
Query: 193 RNPLTTLKGHKEAISGVQW 249
+T+L GH + +S V W
Sbjct: 262 GEAVTSLVGHTQCVSSVVW 280
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +3
Query: 255 YNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITA-SADRHVRLYDP 431
++ + SS WDH ++ WD + G + KA VD ++++I A +D +R++DP
Sbjct: 283 HDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDP 342
Query: 432 RST-ESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLW 560
R S F+SH+ W+ + +W K+ + LW
Sbjct: 343 RKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLW 386
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSK------PEHGTT 192
RGH ++ +S GN S SWD + LW+ + + E + K + E +
Sbjct: 202 RGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESVSVKKRKGNNQAEESQSE 261
Query: 193 RNPLTTLKGHKEAISGVQW 249
+T+L GH + +S V W
Sbjct: 262 GEAVTSLVGHTQCVSSVVW 280
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAF-FDVDWSPLNNSIITASADRHVRLYDPRST 440
++S G D L+K+WD G + G+K V W+ N ++TAS D+ ++LYD R+
Sbjct: 283 LVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTM 342
Query: 441 ESIVKTTFTSHTGWVQSVRW 500
+ + +F HT V S+ W
Sbjct: 343 KEL--QSFRGHTKDVTSLAW 360
Score = 33.9 bits (74), Expect = 0.089
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 360 VDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSK 506
VDW P + +++ D+ V+L+D RS + + H V SV+W++
Sbjct: 274 VDWHPTKSLLVSGGKDQLVKLWDTRSGREL--CSLHGHKNIVLSVKWNQ 320
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 48.4 bits (110), Expect = 4e-06
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASADRHVR 419
S DG LS WD L++WD G + G+ K V +S N I++AS DR ++
Sbjct: 72 SSDG-QFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIK 130
Query: 420 LYDPRSTESIVKTTFTSHTGWVQSVRWSK---TKTLFSFLLDTTTRFKLWGNQGSP-RNS 587
L++ + H WV VR+S T+ S D T K+W Q RNS
Sbjct: 131 LWNTLGECKYTISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTV--KVWNLQNCKLRNS 188
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
GH +E + +S+DG SGSWD + LW + E
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGE 96
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLYD 428
T++S+ WD +K+W+ ++ + G+ + + V SP + + D + L+D
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH + ++VS DG+ ASG D + LW
Sbjct: 191 GHSGYLNTVAVSPDGSLCASGGKDGVILLW 220
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASADRHVR 419
S DG LS WD L++WD G + G+ K V +S N I++AS DR ++
Sbjct: 72 SSDG-QFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIK 130
Query: 420 LYDPRSTESIVKTTFTSHTGWVQSVRWSK---TKTLFSFLLDTTTRFKLWGNQGSPRNST 590
L++ + H WV VR+S T+ S D T K+W Q +T
Sbjct: 131 LWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTV--KVWNLQNCKLRNT 188
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
GH ++ + +S+DG SGSWD + LW + E
Sbjct: 61 GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGE 96
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLYD 428
T++S+ WD +K+W+ ++ +AG+ + + V SP + + D + L+D
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T GH + ++VS DG+ ASG D + LW
Sbjct: 188 TLAGHSGYLNTVAVSPDGSLCASGGKDGVILLW 220
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 44.4 bits (100), Expect = 6e-05
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASADRHVR 419
S DG LS WD L++WD G + G+ K V +S N I++AS DR ++
Sbjct: 72 SSDG-QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 130
Query: 420 LYDP-RSTESIVKTTFTSHTGWVQSVRWSKT---KTLFSFLLDTTTRFKLWGNQGSPRNS 587
L++ + + H WV VR+S T+ S D T K+W S
Sbjct: 131 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV--KVWNLSNCKLRS 188
Query: 588 T 590
T
Sbjct: 189 T 189
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH +E + +S+DG SGSWD + LW
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLW 90
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLYD 428
T++S+ WD +K+W+ ++ +AG+ + V SP + + D V L+D
Sbjct: 166 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 222
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T GH + ++VS DG+ ASG D V LW
Sbjct: 189 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 221
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVR 419
S DG V+S G D+++K+WD G + E ++ +D+ PL + T SADR V+
Sbjct: 100 SPDG-RWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVK 158
Query: 420 LYDPRSTESIVKTTFTSHTGWVQSVRWSKT-KTLFSFLLD 536
+D + E ++ TT TG V+++ + +TLF L D
Sbjct: 159 FWDLETFE-LIGTTRPEATG-VRAIAFHPDGQTLFCGLDD 196
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/91 (30%), Positives = 41/91 (45%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTR 195
C+ TY+GH +GI + S DG SG DN V +W + A + H P
Sbjct: 83 CIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLT-AGKLLHEFKCHEGPIRSLDF 141
Query: 196 NPLTTLKGHKEAISGVQWMDTTQYCPVVGTT 288
+PL L A V++ D + ++GTT
Sbjct: 142 HPLEFLLATGSADRTVKFWDLETF-ELIGTT 171
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRST 440
+L+ D +WD KQ+ + DVDW N S T+S D + L +
Sbjct: 380 LLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDSMIYLC--KIG 436
Query: 441 ESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLW 560
E+ TFT H G V V+W T +L + D +T K+W
Sbjct: 437 ETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTA-KIW 475
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 261 TVLSSGWDHLLKIWDCDLGGIKQEIAGNK-AFFDVDWSPLNNSIITASADRHVRLYDPRS 437
T+ S+ +D +K+WD +LG + G++ + + +SP I + S D+ + ++ +
Sbjct: 513 TLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKE 572
Query: 438 TESIVKTTFTSHTGWVQSVRWSK 506
+ IVK T+T + G + V W+K
Sbjct: 573 GK-IVK-TYTGN-GGIFEVCWNK 592
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASADRHVRLYDPR 434
+ S D + IW G I + GN F+V W+ N I AD V + D R
Sbjct: 556 IASGSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIAACFADNSVCVLDFR 612
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
+ ++ GH + + L+ S +G ASGS D ++ +WS
Sbjct: 534 LCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWS 569
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 MDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRL 422
+DG ++SS D L++WD + Q ++G+ + + VD P ++T SAD+ +R
Sbjct: 157 LDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELRF 216
Query: 423 Y 425
Y
Sbjct: 217 Y 217
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
+S+ ++ GH + C+ +S+DG +GS D N+ +W +
Sbjct: 570 DSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGD 615
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
C + + H + L + G+ ASGS DN++ LW
Sbjct: 98 CEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILW 133
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
++T GH I CL++S G+ +GS D ++ W S
Sbjct: 659 LLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRS 696
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRST 440
+ S G D L+K WD D + G+ A + + S + ++T S DR +R +D RS
Sbjct: 639 LFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWD-RSE 697
Query: 441 E 443
E
Sbjct: 698 E 698
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 41.5 bits (93), Expect = 4e-04
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Frame = +3
Query: 270 SSGWDHLLKIWDCDLGG---IKQEIAGNKAFFDVDWSPLN-NSIITASADRHVRLYDPRS 437
S G D L +WD G K E A + VDW+P + N I+T SAD VRL+D R
Sbjct: 310 SVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRK 369
Query: 438 -TESIVKT---TFTSHTGWVQSVRWSKTKT 515
T + V + F H V V+WS K+
Sbjct: 370 LTANGVGSPIYKFEGHKAAVLCVQWSPDKS 399
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
NS CM TY GH K + + S DG++F + +D N+ W +
Sbjct: 314 NSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQ 359
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSP---LNNSIITASADRH 413
S DG + L++G+D +K WD + G + + K + V +P N ++ +D+
Sbjct: 335 SNDG-SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 393
Query: 414 VRLYDPRSTESIVKTTFTSHTGWVQSV 494
+ +D + E V + H G V ++
Sbjct: 394 IVQWDINTGE--VTQEYDQHLGAVNTI 418
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASADRHVRLY 425
+LS D LKIW+ +KQ++ G+ F VDWSP +++ DR ++L+
Sbjct: 417 LLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/78 (34%), Positives = 32/78 (41%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTR 195
C T GH + + C+S S DG + ASGS D V LW T
Sbjct: 101 CSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDL-------------------YTE 141
Query: 196 NPLTTLKGHKEAISGVQW 249
PL T KGHK + V W
Sbjct: 142 TPLFTCKGHKNWVLTVAW 159
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRN 198
+ T +GH + ++ S DG SGS +C W+ E E P T K G +
Sbjct: 144 LFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWE 203
Query: 199 PL 204
P+
Sbjct: 204 PV 205
Score = 36.7 bits (81), Expect = 0.013
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 KSTDHFKRTQGGYLGCSMDGYNTVLSSGWDHLLKIWDCDLGGI-KQEIAGNKAFFD-VDW 368
K+ + + +T+G D ++S D + +W+ + K+ + G++ + V +
Sbjct: 316 KALERYNKTKG-------DSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYF 368
Query: 369 SPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWS-KTKTLFSFLLDTTT 545
SP I +AS D+ VRL++ + + + T F H G V V WS ++ L S D+T
Sbjct: 369 SPDGKWIASASFDKSVRLWNGITGQFV--TVFRGHVGPVYQVSWSADSRLLLSGSKDST- 425
Query: 546 RFKLW 560
K+W
Sbjct: 426 -LKIW 429
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 327 QEIAGN-KAFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWS 503
Q IAG+ +A V +SP + + S D VRL+D TE+ + T H WV +V WS
Sbjct: 103 QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWD-LYTETPL-FTCKGHKNWVLTVAWS 160
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
GH + + + S DG AS S+D +V LW+
Sbjct: 358 GHQQLVNHVYFSPDGKWIASASFDKSVRLWN 388
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +3
Query: 270 SSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASADRHVRLYDPRSTESI 449
S D +IW D + +AG+ + DVDW P N I T S+D+ VRL+D ++ E +
Sbjct: 477 SCSHDRTARIWSMDRIQPLRIMAGHLS--DVDWHPNCNYIATGSSDKTVRLWDVQTGECV 534
Query: 450 VKTTFTSHTGWVQSVRWS 503
F H V S+ S
Sbjct: 535 --RIFIGHRSMVLSLAMS 550
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLA 138
+C+ + GH + L++S DG ASG D + +W S A
Sbjct: 532 ECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTA 573
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
C+ GH+ + LS S +G+ ASGS D V LW +
Sbjct: 575 CITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVT 613
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T+ G+ C S+S DG+ A G D+++ +W
Sbjct: 347 TFVNTHNGLNCSSISHDGSLVAGGFSDSSIKVW 379
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 234 LGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAG-NKAFFDVDWSPLNNSIITASADR 410
L S DG + S D + +WD + G N + + +S + + + SAD
Sbjct: 547 LAMSPDG-RYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADC 605
Query: 411 HVRLYDPRSTESIVKT-TFTSHTGWVQSVRWSKTKT 515
V+L+D S+ + K ++ ++S+R TK+
Sbjct: 606 TVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKS 641
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 10 VDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
+D + H I CL +SADG+ +GSWD+N+ +W+
Sbjct: 269 LDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIWA 307
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 10 VDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
+D + H I CL +SADG+ +GSWD+N+ +W+
Sbjct: 331 LDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIWA 369
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENH 153
C T +GH + L + + NR S S D + +W+A L ++ H
Sbjct: 57 CCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNA-LTSQKTH 101
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAG-NKAFFDVDWSPLNNSIITASADRHVR 419
S+DG TV S D L++WD G + E+AG + A V S N I+T+ D
Sbjct: 366 SIDGL-TVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHN 424
Query: 420 LYDPRSTE 443
++D R+ E
Sbjct: 425 VFDTRTLE 432
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/91 (28%), Positives = 41/91 (45%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTR 195
C+ TY+GH +GI + + DG SG DN V +W + A + H P
Sbjct: 134 CIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLT-AGKLLHEFKFHEGPIRSLDF 192
Query: 196 NPLTTLKGHKEAISGVQWMDTTQYCPVVGTT 288
+PL L A V++ D + ++G+T
Sbjct: 193 HPLEFLLATGSADRTVKFWDLETF-ELIGST 222
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
T GH I C+ S DGN AS S D + LWSA+
Sbjct: 38 TLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73
Score = 34.3 bits (75), Expect = 0.067
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 1 RNSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
R+ +C+ RGH + C++ + N SGS+D + +W
Sbjct: 115 RSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIW 155
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSA 129
Y GH GI L+ S+D + S S D + +W A
Sbjct: 81 YEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDA 114
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEE 144
TYRGH+ + C VS D +R +GS D LW +E
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKE 86
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAG-NKAFFDVDWSPLNNSIITASADRHVRLYDPRST 440
+ S DH +W D G G N A + D S ++ +IT SAD+ +L+D +S
Sbjct: 25 LFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSG 84
Query: 441 ESIVKTTFTSHT 476
+ + F + T
Sbjct: 85 KELFTFKFNAPT 96
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH K I L +AD + F +GS D LW
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLW 220
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEE 144
TYRGH+ + C VS D +R +GS D LW +E
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKE 86
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAG-NKAFFDVDWSPLNNSIITASADRHVRLYDPRST 440
+ S DH +W D G G N A + D S ++ +IT SAD+ +L+D +S
Sbjct: 25 LFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSG 84
Query: 441 ESIVKTTFTSHT 476
+ + F + T
Sbjct: 85 KELFTFKFNAPT 96
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH K I L +AD + F +GS D LW
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLW 220
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEE 144
TYRGH+ + C VS D +R +GS D LW +E
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKE 86
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAG-NKAFFDVDWSPLNNSIITASADRHVRLYDPRST 440
+ S DH +W D G G N A + D S ++ +IT SAD+ +L+D +S
Sbjct: 25 LFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSG 84
Query: 441 ESIVKTTFTSHT 476
+ + F + T
Sbjct: 85 KELFTFKFNAPT 96
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH K I L +AD + F +GS D LW
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLW 220
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRST 440
V+S G D+++K+WD G + E ++ +D+ P + T SADR V+ +D +
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETF 217
Query: 441 ESI 449
E I
Sbjct: 218 ELI 220
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS----LAEEENHPATKKSKPEH 183
C+ TY+GH +G+ L + DG SG DN V +W + L E ++H +S H
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFH 194
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRST 440
V+S G D+++K+WD G + E ++ +D+ P + T SADR V+ +D +
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETF 217
Query: 441 ESI 449
E I
Sbjct: 218 ELI 220
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS----LAEEENHPATKKSKPEH 183
C+ TY+GH +G+ L + DG SG DN V +W + L E ++H +S H
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFH 194
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 297 IWDCDLGGIKQEIAGNK---AFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKT 458
IWD + GI +EI N A V WS + ++ ++AD+ + L+D + E I +T
Sbjct: 49 IWDFETRGIAKEIRDNDCSAAITSVSWSKYGHRLLVSAADKSLTLWDVSTGEKIART 105
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
C+ TY+GH +G+ L + DG SG DN V +W
Sbjct: 228 CIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVW 263
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEE 144
TYRGH + C +S D +R +GS D LW +E
Sbjct: 74 TYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKE 113
Score = 28.7 bits (61), Expect = 3.3
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Frame = +3
Query: 108 QCLSLECKLSRRRKPSSYEEK*TRTRHY*KSTDHFKRTQGGYLGCSMDGYNTVLSSGWDH 287
+C++ E + K SS++ TR R T +L + +G + + S DH
Sbjct: 4 ECVNPEGLRFNQMKSSSHQTLETRMRPILMKGHERPLT---FLRYNRNG-DLLFSCAKDH 59
Query: 288 LLKIWDCDLGGIKQEIAGNK-AFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTF 464
+W D G G+ A + D S ++ +IT SAD+ +L+D +S + + F
Sbjct: 60 TPTVWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFKF 119
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLW 123
GH + I L +AD + F +GS D LW
Sbjct: 218 GHKEAITSLCKAADDSHFLTGSHDKTAKLW 247
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 36.3 bits (80), Expect = 0.017
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Frame = +3
Query: 225 GGYLGCSMDGYNTVL-SSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITAS 401
G +G + D NT++ S+G+ LK+WD +K + + + + +N + T +
Sbjct: 475 GEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVA 534
Query: 402 ADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKT-KTLFSFLLDTTTR 548
D +RLYD + + + F HT + + +S+ K + S +D + R
Sbjct: 535 DDFVIRLYDVVTLKMV--REFRGHTDRITDLCFSEDGKWVISSSMDGSLR 582
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEE 144
+RGH I L S DG S S D ++ +W LA++
Sbjct: 553 FRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQ 591
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 270 SSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLYDPRSTES 446
++ +DH ++ W+ + G + I + + ++ +P + + A+ + H+RL+D S
Sbjct: 10 TASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITP-DKHYLAAACNPHIRLFDVNSNSP 68
Query: 447 IVKTTFTSHTGWVQSVRWS-KTKTLFSFLLDTTTRFKLW 560
T+ SHT V +V + K ++S D T K+W
Sbjct: 69 QPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTV--KIW 105
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASLA----EEENHPATKKSKPEHGTTRNP 201
GH + CL++S D N +GS D+ V LW A + P+T P + N
Sbjct: 2666 GHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSGAPSSTSNTNL 2725
Query: 202 LTTL--KGHKEAISG 240
TL KG K + G
Sbjct: 2726 ANTLANKGKKCRLEG 2740
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAF-FDVDWSPLNNSII-TASADRHV 416
S DG T+ S+ DH +KI DC+ G + + G++ + V + P ++ I+ + S D V
Sbjct: 115 STDG-RTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEV 173
Query: 417 RLYDPRSTESI 449
RL++ ++E I
Sbjct: 174 RLWNTTTSECI 184
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEEN 150
TYRGH + + L S G + ASG DN V +W S+A +
Sbjct: 261 TYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNS 302
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +3
Query: 231 YLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNK---AFFDVDWSPLNNSIITAS 401
YL G VL+ DH + +WD G + + ++ ++W+P +
Sbjct: 142 YLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGL 201
Query: 402 ADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWS 503
+ V+L+D S + +T H V S+ W+
Sbjct: 202 NNSEVQLWDSASNRQL-RTLKGGHQSRVGSLAWN 234
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEEN 150
TYRGH + + L S G + ASG DN V +W S+A +
Sbjct: 251 TYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNS 292
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +3
Query: 231 YLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNK---AFFDVDWSPLNNSIITAS 401
YL G VL+ DH + +WD G + + ++ ++W+P +
Sbjct: 132 YLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGL 191
Query: 402 ADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWS 503
+ V+L+D S + +T H V S+ W+
Sbjct: 192 NNSEVQLWDSASNRQL-RTLKGGHQSRVGSLAWN 224
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAF-FDVDWSPLNNSII-TASADRHV 416
S DG T+ S+ DH +KI DC+ G + + G++ + V + P ++ I+ + S D V
Sbjct: 112 SSDG-RTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEV 170
Query: 417 RLYDPRSTESI 449
RL++ ++ E I
Sbjct: 171 RLWNAKTGECI 181
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAF-FDVDWSPLNNSII-TASADRHV 416
S DG T+ S+ DH +KI DC+ G + + G++ + V + P ++ I+ + S D V
Sbjct: 112 SSDG-RTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEV 170
Query: 417 RLYDPRSTESI 449
RL++ ++ E I
Sbjct: 171 RLWNAKTGECI 181
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 35.5 bits (78), Expect = 0.029
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEE 147
TY GH + + L S GN+ ASG DN V +W SLA +
Sbjct: 247 TYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSK 287
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 43 KGIECLSVSADGNRFASGSWDNNVCLW 123
K I CL+ ADGN SGS D VC+W
Sbjct: 264 KAITCLAYCADGNLLISGSEDGVVCVW 290
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
+ GH + + CL S D + SGS D ++ +WS
Sbjct: 116 WHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWS 148
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 35.5 bits (78), Expect = 0.029
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDV-DWSPLNNS-IITASADRHVRLYDPR 434
++S G D ++K WD + ++ G+K + D SP+N+S ++T S D V+++D R
Sbjct: 151 LVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDAR 209
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +3
Query: 240 CSMDGYNTVLSSGWDHLLKIWDCDL--GGIKQEIAGNKAFFDVDWSPLNNSIITASADRH 413
CS + +++ +DH +K+WD + EI DV + P I TA +
Sbjct: 186 CSPVNDSMLVTGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPSGGLIATAGGN-S 244
Query: 414 VRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLL 533
V+++D +V + SH V S+R ++ ++ S L+
Sbjct: 245 VKVWDLIGGGKMV-CSMESHNKTVTSLRVARMESAESRLV 283
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 35.1 bits (77), Expect = 0.038
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
C + Y+GH + +S + G ASGS D +V +W
Sbjct: 415 CYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMW 450
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
+GH + CL ++ GN SGS D N+C+W
Sbjct: 364 KGHKSAVLCLGIA--GNLLLSGSADKNICVW 392
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE-EENHPATKKSK 174
+GH + C+ + G +ASGS D + +W + A EEN ++++ K
Sbjct: 267 KGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVK 315
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE-EENHPATKKSK 174
+GH + C+ + G +ASGS D + +W + A EEN ++++ K
Sbjct: 267 KGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVK 315
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENH 153
RGH K I CL+V++D SGS D ++ +W L E+E +
Sbjct: 325 RGHRKAIMCLAVASD--LVLSGSADKSLRVWRRGLMEKEGY 363
Score = 32.7 bits (71), Expect = 0.21
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 234 LGCSMDGYNTVLSSGWDHLLKIW-DCDLGGIKQ-EIAGNKAFFDVDWSPLNNSIITASAD 407
L S DG + + S+ WD KIW D + E A + A + S + + T SAD
Sbjct: 198 LALSQDG-SLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSK-DGFVYTGSAD 255
Query: 408 RHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKT-KTLFSFLLD 536
+ +++++ + + + T T H V ++ S+ K L+S D
Sbjct: 256 KKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACD 299
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
T+ H + L++S DG+ S SWD + +W S
Sbjct: 187 TWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTS 222
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 33.9 bits (74), Expect = 0.089
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 333 IAGNKAFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSV 494
IA A FD+ W ++ ++TAS D+ ++++D E+ HTG V+S+
Sbjct: 125 IAHYNAIFDISWIKGDSCLLTASGDQTIKVWDVE--ENKCTGVLIGHTGTVKSM 176
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLA 138
TY GH + + L S G + ASG DN V +W SLA
Sbjct: 231 TYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLA 268
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
++T RGH + L+ S D + ASGS DN V +W+
Sbjct: 111 VMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWN 146
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +3
Query: 270 SSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASADRHVRLYDPRSTES 446
SSG+D L ++WD G+ K VD+SP + + D R++D R +
Sbjct: 147 SSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKL 206
Query: 447 IVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLWGNQ 569
+ +H V V++ + F +W +
Sbjct: 207 LY--IIPAHVNLVSQVKYEPQERYFLATASHDMNVNIWSGR 245
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
++ ++GH K + + S +G ASG DN +W
Sbjct: 165 ILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIW 199
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 249 DGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPL--NNSIITASADRHVRL 422
D + V+S+G+D L++WDC + + + F D S + II S D VR
Sbjct: 112 DSSSVVVSAGFDRSLRVWDCRSHSV-EPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRT 170
Query: 423 YDPR 434
+D R
Sbjct: 171 FDMR 174
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTT 192
+ +T GH I +S+S DG+ + DN +C+W +N +H
Sbjct: 213 EATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFE 272
Query: 193 RNPL 204
+N L
Sbjct: 273 KNLL 276
Score = 32.3 bits (70), Expect = 0.27
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Frame = +3
Query: 234 LGCSMDGYNTVLSSGWDHLLKIWD----CDLGGIKQEIAGNKAFFDVD-----WSPLNNS 386
+ S DG + +L++G D+ L +WD + G++ F+ + WSP
Sbjct: 228 MSLSPDG-SYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTK 286
Query: 387 IITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTL 518
+ S+DR V ++D S +I K HTG V + T+ +
Sbjct: 287 VTAGSSDRMVHIWDTTSRRTIYK--LPGHTGSVNECVFHPTEPI 328
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/72 (29%), Positives = 27/72 (37%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTTL 213
GH + + + G ASGS D + LW HG +N L
Sbjct: 51 GHPSAVYTMKFNPAGTLIASGSHDREIFLWRV-----------------HGDCKN-FMVL 92
Query: 214 KGHKEAISGVQW 249
KGHK AI + W
Sbjct: 93 KGHKNAILDLHW 104
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 249 DGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASADRHVRLY 425
DG+ + S WD LKIW K+ I + + N ++ T SADR +R++
Sbjct: 205 DGF--IYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVW 261
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T H + L+++ DG+ SGS D ++ +W
Sbjct: 275 TLEKHKSAVNALALNDDGSVLFSGSCDRSILVW 307
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 1 RNSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
RN + +R H I CL++S D SGSWD +W S
Sbjct: 199 RNRSSAALGFR-HLDAISCLALSEDKRLLYSGSWDKTFKVWRVS 241
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 49 IECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTTLKGHKE 228
I C + +A+G F +GS D+N +WSAS ++ +P H L L+GH+
Sbjct: 452 ILCCAYNANGTIFVTGSSDSNARVWSASKPNLDD-----AEQPTH-----ELDVLRGHEN 501
Query: 229 AISGVQW 249
++ VQ+
Sbjct: 502 DVNYVQF 508
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
GHD+ I CL+ S N S D +CLWS
Sbjct: 509 GHDQKITCLAFSRCFNVLVSSDSDGKLCLWS 539
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +3
Query: 258 NTVLSSGWDHLLKIWDCDL-GGIKQEIAGNKAFFDVDWSPLNNSII-TASADRHVRLYDP 431
++ L+S WD +K+W D ++ + W+P + + +AS D +R++D
Sbjct: 120 DSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDV 179
Query: 432 RSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLW 560
R S + +H + S W+K K+W
Sbjct: 180 REPGSTM--IIPAHDFEILSCDWNKYDDCILATSSVDKTVKVW 220
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLY 425
++S D+ IWD + G + Q + + + V W PL + + S+DR R+Y
Sbjct: 68 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIY 122
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLY 425
++S D+ IWD + G + Q + + + V W PL + + S+DR R+Y
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFD-VDWSPLNNSIITASADRHVRLY 425
++S D+ IWD + G + Q + + + V W PL + + S+DR R+Y
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +3
Query: 261 TVLSSGW-DHLLKIWDCDLGGIKQ----EIAGNKAFFD-VDWSPLNNSII-TASADRHVR 419
T L+SG D +IW+ + G + E+ G+ D + W P ++ ++ TAS D+ VR
Sbjct: 33 TKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVR 92
Query: 420 LYDPRS 437
L+D RS
Sbjct: 93 LWDARS 98
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
T H G C+++ G FA GS D+ V LW S
Sbjct: 186 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDIS 221
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLT 207
Y+GH K + ++ +++G + ASGS D +W+ HG ++
Sbjct: 16 YQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIE---------------PHGHSKAKDL 60
Query: 208 TLKGHKEAISGVQW 249
LKGH +++ + W
Sbjct: 61 ELKGHTDSVDQLCW 74
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 32.3 bits (70), Expect = 0.27
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +3
Query: 240 CSMD---GYNTVLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASAD 407
CSMD + + + G D ++D G I + G+ K V + ++ ++TASAD
Sbjct: 226 CSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASAD 285
Query: 408 RHVRLY-DPRSTESIVKTTFTSHTGWVQSVRWSKTKTLF-SFLLDTTTRF 551
+ VR++ +P T H+ V++V T F S LD T F
Sbjct: 286 KTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCF 335
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 32.3 bits (70), Expect = 0.27
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +3
Query: 240 CSMD---GYNTVLSSGWDHLLKIWDCDLGGIKQEIAGN-KAFFDVDWSPLNNSIITASAD 407
CSMD + + + G D ++D G I + G+ K V + ++ ++TASAD
Sbjct: 226 CSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASAD 285
Query: 408 RHVRLY-DPRSTESIVKTTFTSHTGWVQSVRWSKTKTLF-SFLLDTTTRF 551
+ VR++ +P T H+ V++V T F S LD T F
Sbjct: 286 KTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCF 335
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEI-AGNKAF-FDVDWSPLN-NSIITASADRHVRLYD 428
VLSS D L+K+WD + G + +I G+ + V ++P + N+ +AS DR +++++
Sbjct: 114 VLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
R H + C++V+AD A+GS+D V +W
Sbjct: 1043 RHHKDVVSCVAVTADSTILATGSYDTTVMVW 1073
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSK 174
N+ +C+ TY H+ + L+V A+G D + LW S A ++ K+ +
Sbjct: 613 NTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASDKEDDFRKEEE 669
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
C+ T+ GH + S DG +F S D + LW+ + +E
Sbjct: 575 CLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSE 616
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +3
Query: 378 NNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKL 557
N I+T S D+ VRL++ S I T H G + +V ++K F K+
Sbjct: 416 NVLIVTGSKDKTVRLWNATSKSCI--GVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKV 473
Query: 558 WGNQGSPRNSTFMTLKRTRRI 620
W G +S +TR +
Sbjct: 474 WSLDGISEDSEEPINLKTRSV 494
Score = 24.6 bits (51), Expect(2) = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
HDK I ++V+ + + +GS D +W
Sbjct: 498 HDKDINSVAVARNDSLVCTGSEDRTASIW 526
Score = 21.8 bits (44), Expect(2) = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 202 LTTLKGHKEAISGVQWMDTTQ 264
+ TLKGHK I V++ Q
Sbjct: 534 VVTLKGHKRRIFSVEFSTVDQ 554
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
HDK + C+ S + +GSWD V W
Sbjct: 97 HDKAVRCVEYSYAAGQVITGSWDKTVKCW 125
Score = 30.7 bits (66), Expect = 0.83
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 177 RTRHY*KSTDHFKRT---QGGYLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAG-- 341
R R Y ST+ K G L C + S G D+ ++ ++G K++I G
Sbjct: 40 RVRLYDVSTNSLKGEFLHGGAVLDCCFHDDFSGFSVGADYKVRRIVFNVG--KEDILGTH 97
Query: 342 NKAFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKT 458
+KA V++S +IT S D+ V+ +DPR +T
Sbjct: 98 DKAVRCVEYSYAAGQVITGSWDKTVKCWDPRGASGPERT 136
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDC-DLGGIKQEIAGNKAFFD--VDWSPLNNSIITASADRHVRLYDPR 434
V++ WD +K WD G ++ G + S + + ++ A+A RHV +YD R
Sbjct: 113 VITGSWDKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVATAGRHVNIYDLR 172
Query: 435 S 437
+
Sbjct: 173 N 173
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 31.9 bits (69), Expect = 0.36
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 297 IWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSH 473
+W G IK ++G++A + +SPL + ++S D VRL+D +++ V+T +H
Sbjct: 461 VWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNH 520
Query: 474 TGWVQSVRWSKTKTLFSFLLDTTTRF 551
+ R K L S LD F
Sbjct: 521 DVLTVAFR-PDGKQLASSTLDGQINF 545
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
++ +GH + C++ S D A+G+ DN V +W+
Sbjct: 342 ILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 377
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 31.9 bits (69), Expect = 0.36
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 297 IWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSH 473
+W G IK ++G++A + +SPL + ++S D VRL+D +++ V+T +H
Sbjct: 501 VWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNH 560
Query: 474 TGWVQSVRWSKTKTLFSFLLDTTTRF 551
+ R K L S LD F
Sbjct: 561 DVLTVAFR-PDGKQLASSTLDGQINF 585
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
++ +GH + C++ S D A+G+ DN V +W+
Sbjct: 382 ILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 417
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.5 bits (68), Expect = 0.47
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPL 204
TY GH + + L S G + ASG DN V +W +H + S P TR L
Sbjct: 213 TYLGHTEEVCGLKWSESGKKLASGGNDNVVHIW--------DHRSVASSNP----TRQWL 260
Query: 205 TTLKGHKEAISGVQW 249
+ H A+ + W
Sbjct: 261 HRFEEHTAAVRALAW 275
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.5 bits (68), Expect = 0.47
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 264 VLSSGWDH-LLKIWDCDLGGIKQEIAGNKAF-FDVDWSPLNNSIITASADRHVRLYDPRS 437
VL SG D + + D + + ++G+ ++ VD SP +I T S+DR VRL+D +
Sbjct: 215 VLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKM 274
Query: 438 TESIVKTTFTSHTGWVQSV 494
+I T ++H V SV
Sbjct: 275 RAAI--QTMSNHNDQVWSV 291
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASL 135
GH + + S DG A+GS D V LW +
Sbjct: 241 GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKM 274
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 136 AEEENHPATKKSKPEHGTTRNPL--TTLKGHKEAISGV 243
A ++NHP ++ S +PL TLKGH +A++G+
Sbjct: 55 APKKNHPKSQASDKNQNKRHHPLDLNTLKGHGDAVTGL 92
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 240 CSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEI-AGNKAFFDVDWSPLNNSIITASA-DRH 413
C D + +L+ D+ WD + I E+ AGN FDV W P +I+AS+ D
Sbjct: 272 CPSDS-SYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPGVISASSFDGK 330
Query: 414 VRLYD 428
+ +Y+
Sbjct: 331 IGIYN 335
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENH-PATKKS 171
++G +G+E ++S+ N ASG+ D +C+W E +H P K S
Sbjct: 121 HKGPVRGLEFNAISS--NLLASGADDGEICIWDLLKPSEPSHFPLLKGS 167
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 240 CSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEI-AGNKAFFDVDWSPLNNSIITASA-DRH 413
C D + +L+ D+ WD + I E+ AGN FDV W P +I+AS+ D
Sbjct: 272 CPSDS-SYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPGVISASSFDGK 330
Query: 414 VRLYD 428
+ +Y+
Sbjct: 331 IGIYN 335
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENH-PATKKS 171
++G +G+E ++S+ N ASG+ D +C+W E +H P K S
Sbjct: 121 HKGPVRGLEFNAISS--NLLASGADDGEICIWDLLKPSEPSHFPLLKGS 167
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T RGH + CL+ A G+ SG D N+C+W
Sbjct: 376 TLRGHRLAVLCLA--AAGSLVLSGGADKNICVW 406
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
H + CLS++ + SGSWD + +W S
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVWRLS 279
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPL-- 204
+GH K + L+ S N S D+ +C+WS E++ A+K+ + G + NPL
Sbjct: 926 KGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQ---ASKQIQIPSGHSPNPLAH 982
Query: 205 TTLKGHKEAI 234
T ++ H++ I
Sbjct: 983 TRVQFHQDQI 992
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPL-- 204
+GH K + L+ S N S D+ +C+WS E++ A+K+ + G + NPL
Sbjct: 926 KGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQ---ASKQIQIPSGHSPNPLAH 982
Query: 205 TTLKGHKEAI 234
T ++ H++ I
Sbjct: 983 TRVQFHQDQI 992
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLG-GIKQEIAGNKAF-FDVDWSPLN-NSIITASADRHVRLYD 428
VLSS D L+K+WD + G Q G+ + V ++P + N+ +AS DR +++++
Sbjct: 114 VLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
++GH + LS+ + G F SGS D V LW
Sbjct: 116 FKGHHDRVVSLSLCSGGECFISGSLDRTVLLW 147
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
++GH + LS+ + G F SGS D V LW
Sbjct: 113 FKGHHDRVVSLSLCSGGECFISGSLDRTVLLW 144
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 31.1 bits (67), Expect = 0.63
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNS----IITASADRHVRLYDP 431
VLSSG D +K+W+ G + +E G K + N++ I A V +D
Sbjct: 233 VLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVTWDA 292
Query: 432 RSTESIVKTTFTSHTGWVQSVRWSKTKTLF-SFLLDTTTRF 551
R+ + + K ++H G + + S +++F + +D + RF
Sbjct: 293 RTADKVAKWP-SNHNGAPRWIEHSPVESVFVTCGIDRSIRF 332
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 31.1 bits (67), Expect = 0.63
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNS----IITASADRHVRLYDP 431
VLSSG D +K+W+ G + +E G K + N++ I A V +D
Sbjct: 325 VLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVTWDA 384
Query: 432 RSTESIVKTTFTSHTGWVQSVRWSKTKTLF-SFLLDTTTRF 551
R+ + + K ++H G + + S +++F + +D + RF
Sbjct: 385 RTADKVAKWP-SNHNGAPRWIEHSPVESVFVTCGIDRSIRF 424
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 306 CDLGGIKQEIAGNK-AFFDVDWSPLNNSIITASADRHVRLYD 428
C++ G G+K + + V WSP ++T SAD+ +++D
Sbjct: 219 CEILGELSSDDGHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 378 NNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKL 557
+N I SAD H+ YD R+ + F+ H V V++ L S D+T R L
Sbjct: 518 SNYIAVGSADHHIHYYDLRNISQPLH-VFSGHKKAVSYVKFLSNNELASASTDSTLR--L 574
Query: 558 W 560
W
Sbjct: 575 W 575
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 216 RTQGGYLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSP 374
+T GG G +DG+N S + LL I +G + + A FD DW+P
Sbjct: 1122 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVG-VNLQAADTVILFDTDWNP 1173
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 216 RTQGGYLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSP 374
+T GG G +DG+N S + LL I +G + + A FD DW+P
Sbjct: 1122 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVG-VNLQAADTVILFDTDWNP 1173
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
+C+ T GH+ ++ +S +A G+ A+ S D +V +W
Sbjct: 109 ECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIW 145
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = +3
Query: 243 SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASADRHVRL 422
S G NTV L + W C + +E + WSP + TAS D +
Sbjct: 44 SCSGDNTVRIWEQSSLSRSWTCKT--VLEE-THTRTVRSCAWSPSGQLLATASFDGTTGI 100
Query: 423 YDPRSTESIVKTTFTSHTGWVQSVRWS 503
+ +E +T H V+SV W+
Sbjct: 101 WKNYGSEFECISTLEGHENEVKSVSWN 127
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
GH + CL+ S DG ASG D V ++ AS
Sbjct: 111 GHKDSVSCLAFSYDGQLLASGGLDGVVQIFDAS 143
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
+C+ TY GH ++ +SVS + + S S DN ++ +S
Sbjct: 361 NCVHTYHGHQDAVQAISVSTNTDFIVSVSVDNTARVFESS 400
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
+ GH+ + C + DG +GS D ++ +W+ E
Sbjct: 193 FSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCE 230
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPE 180
+GH + C+ + G +ASGS D + +W E +SKP+
Sbjct: 267 KGHHGPVHCVRFAPTGESYASGSEDGTIRIWQTGPVNPEE---ISESKPK 313
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEEN 150
GH+ + L ++AD + A+ S D + LW++S ++E+
Sbjct: 506 GHESKVASLDITADSSCIATVSHDRTIKLWTSSGNDDED 544
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 357 DVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKT-KTLFSFLL 533
DV +SP+++ + TASADR +L+ T+ + TF H + V + + K L +
Sbjct: 303 DVVFSPVDDCLATASADRTAKLW---KTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSY 359
Query: 534 DTTTRFKLW 560
D T ++LW
Sbjct: 360 DKT--WRLW 366
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
++ ++GH K + ++ S +G ASG DN +W
Sbjct: 416 ILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 30.7 bits (66), Expect = 0.83
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 34 GHDKGIECLSVSADGNRFA-SGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTT 210
GHDK LS S + SGS D +CLW S AT + K N +
Sbjct: 166 GHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVS--------ATPQDK-----VLNAMFV 212
Query: 211 LKGHKEAISGVQW 249
+GH+ AI+ V W
Sbjct: 213 YEGHESAIADVSW 225
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 366 WSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTT 545
WSP N + T S D V +Y+ S T +H G V +V + T+ S D +
Sbjct: 407 WSPNNKMVATGSIDTCVIVYEVDKPASSRITARNAHLGGVNAVAFIDDCTVASSGEDASV 466
Query: 546 RFKLW 560
R LW
Sbjct: 467 R--LW 469
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Frame = +3
Query: 216 RTQGGYLGC---SMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIA---GNK-AFFDVDWSP 374
R ++ C S DG + S D I+D G E+A G+K + + V WSP
Sbjct: 48 REHSNFVNCIRYSPDGTKFITVSS-DKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSP 106
Query: 375 LNNSIITASADRHVRLY---DPRSTESIVKTTFTSHTGWVQSV 494
+ ++T SAD+ +++ + + S++KT +G + +
Sbjct: 107 DSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDM 149
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDC-DLGGIKQEIAGNKAFFDV--DWSPLNNSIITASADRHVRLYDPR 434
V++ WD +K WD G ++ G + S + N ++ A+A RHV +YD R
Sbjct: 112 VITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVATAGRHVNIYDLR 171
Query: 435 S 437
+
Sbjct: 172 N 172
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
H+K + C+ S + +GSWD + W
Sbjct: 96 HEKPVRCVEYSYAAGQVITGSWDKTIKCW 124
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 294 KIWDCDLGGIKQEIAGN--KAFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKT 458
K+ D K+++ G K V++S +IT S D+ ++ +DPR +T
Sbjct: 79 KVRRIDFNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERT 135
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
H + CLS++ D SGSWD + +W S
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLS 275
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
T GH + CL+ + G+ SG D N+C+W
Sbjct: 372 TIHGHRMAVLCLATA--GSLLLSGGADKNICVW 402
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 30.7 bits (66), Expect = 0.83
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
H + CLS++ D S SWD V +W
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDRTVKVW 162
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 30.7 bits (66), Expect = 0.83
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = +3
Query: 267 LSSGWDHLLKIWDCDLGG--IKQEIAGNKAFFDVDWSPLNNSIITA-SADRHVRLYDPRS 437
++ +DH LK+WD + + ++ G + +++++I A + D VRL D S
Sbjct: 120 ITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIAS 179
Query: 438 TESIVKTTFTSHTGWVQSVRWSKTK--TLFSFLLDTTTRF 551
T + H V SV WS + L++ D RF
Sbjct: 180 --GAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRF 217
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 462 FTSHTGWVQSVRWSKTKTLFSFLLDTTTRFKLW 560
F HTG V + WSK L S +D T R LW
Sbjct: 324 FRGHTGEVLDISWSKDNYLLSASMDKTVR--LW 354
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 FKRTQGGYLGCSMDGYNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLN-NS 386
F+ G L S N +LS+ D +++W A N V ++P+N N
Sbjct: 324 FRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNENY 383
Query: 387 IITASADRHVRLYD 428
++ S D VR+++
Sbjct: 384 FMSGSIDGKVRIWN 397
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVS---ADGNRFASGSWDNNVCLWSAS----LAEEENHPAT 162
+S + TY GH C+S + +G R SGS DN V +W + L + E H T
Sbjct: 228 SSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTET 287
Query: 163 KKSKPEHGT 189
+ H T
Sbjct: 288 VMNVACHPT 296
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
T GH C++ + N SGS+D V +W +
Sbjct: 108 TLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVT 143
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLG-GIKQEIAGNKAF-FDVDWSPLN-NSIITASADRHVRLYD 428
VLSS D L+K+WD + G Q G+ + V ++P + N+ +AS DR +++++
Sbjct: 114 VLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN 171
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLG-GIKQEIAGNKAF-FDVDWSPLN-NSIITASADRHVRLYD 428
VLSS D L+K+WD + G Q G+ + V ++P + N+ +AS DR +++++
Sbjct: 114 VLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN 171
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLG-GIKQEIAGNKAF-FDVDWSPLN-NSIITASADRHVRLYD 428
VLSS D L+K+WD + G Q G+ + V ++P + N+ +AS DR +++++
Sbjct: 114 VLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN 171
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +3
Query: 267 LSSGWDHLLKIWDCDLGGIKQE--IAGNKAFFDVDWSPLNNSIITASADR-HVRLYDPRS 437
++ +DH +K+WD + + + + G + +++++I A D VRL D S
Sbjct: 120 ITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIAS 179
Query: 438 TESIVKTTFTSHTGWVQSVRWSKTK--TLFSFLLDTTTRF 551
T + H V SV WS + L++ D RF
Sbjct: 180 --GAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRF 217
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +1
Query: 25 TYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPL 204
TY GH + + L S G + ASG N V +W +H + SKP TR L
Sbjct: 244 TYLGHTEEVCGLKWSESGKKLASGGNYNVVHIW--------DHRSVASSKP----TRQWL 291
Query: 205 TTLKGHKEAISGVQW 249
+ H A+ + W
Sbjct: 292 HRFEEHTAAVRALAW 306
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 16 CMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENH 153
C T +GH + L + + NR S S D + +W+A L ++ H
Sbjct: 57 CCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNA-LTSQKTH 101
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAE 141
Y H+K L+VS+DG A+G D +V LW E
Sbjct: 202 YTRHNKQSLALAVSSDGRYLATGGVDCHVHLWDIRTRE 239
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 GNRFASGSWDNNVCLWSASLAEEEN-HP 156
G+RFAS + D VC W + + N HP
Sbjct: 2218 GHRFASAALDGTVCTWQSEVGGRSNIHP 2245
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
HD + C+ S D ASGS D + +W
Sbjct: 262 HDDPVLCIDFSRDSEMLASGSQDGKIKIW 290
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 29.9 bits (64), Expect = 1.4
Identities = 30/104 (28%), Positives = 48/104 (46%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLT 207
++G +G+E +V + N+ ASG+ D VC+W + SKP H
Sbjct: 114 HKGPVRGLE-FNVKSP-NQLASGADDGTVCIWDLA----------NPSKPSHYLK----G 157
Query: 208 TLKGHKEAISGVQWMDTTQYCPVVGTTY*KFGTVIWVVLNKKLL 339
T + IS + W Q+ V+ +T TVIW V N+K++
Sbjct: 158 TGSYMQSEISSLSWNKGFQH--VLASTSHNGTTVIWDVNNEKII 199
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEI-AGNKAFFDVDWSPLNNSIITASA-DRHVRLYD 428
+L+ G D+ W+ G I E+ G FDV W P +I+AS+ D + +Y+
Sbjct: 268 LLTCGKDNRTICWNTKTGKIVAELPTGQNWNFDVHWYPKMPGVISASSVDGKIGIYN 324
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 49 IECLSVSADGNRFASGSWDNNVCLWSAS 132
I+C VS DG +G+ D VC+W S
Sbjct: 3333 IQCAGVSHDGRIVVTGAEDGLVCVWRVS 3360
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
RGH + + CL+V +D SGS D V LW S
Sbjct: 302 RGHTESVLCLAVVSD--ILCSGSADKTVRLWKCS 333
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +3
Query: 183 RHY*KSTDHFKRTQGGYLGCSMDGYNTVLSSGWDHLLKIW-DCDLGGIKQEIAGNKAFFD 359
RH S H G L S DG + S WD LKIW D ++ + +
Sbjct: 155 RHKKASWVHHVDAVSG-LALSRDG-TLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAIN 212
Query: 360 VDWSPLNNSIITASADRHVRLYDPRSTESIVK 455
N I T S+D+ ++++ E VK
Sbjct: 213 AVALSENGDIYTGSSDQRIKVWRKNINEENVK 244
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASADRHVRLYDPRSTE 443
V++ D L+K+W D G++ D + +N+I ASA + R +
Sbjct: 260 VITGSDDRLVKVWSMDTAYCLASCRGHEGDI-TDLAVSSNNIFIASASNDCVIRVWRLPD 318
Query: 444 SIVKTTFTSHTGWVQSVRWS 503
+ + HTG V ++ +S
Sbjct: 319 GLPVSVLRGHTGAVTAIAFS 338
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATK--KSKPEHGTTR 195
+GH K I L+ S N S D +C WS E+ A + K +G TR
Sbjct: 901 KGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGKAANGDTR 957
>At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 290
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 602 KGHKSGVPWTSLVSPKFKPGCRIQQKRKECLCF---RPAN*LDPS 477
KG+ S VPW +S K G + K+++ L F +P LDPS
Sbjct: 220 KGNVSDVPWWDELSQCGKEGLSVLPKKRDALLFWSMKPDASLDPS 264
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 348 AFFDVDWSPLNNSIITASADRHVRLY 425
A D+D+SP +T S DR VR++
Sbjct: 281 AVMDIDFSPTGREFVTGSYDRSVRIF 306
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 55 CLSVSADGNRFASGSWDNNVCLWSASLAEE 144
C+ S D SGS D N+ LW A +E+
Sbjct: 327 CVKYSCDATYVISGSDDTNLRLWKAKASEQ 356
>At3g12150.1 68416.m01514 expressed protein
Length = 363
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -2
Query: 260 VVSIH*TPEIASLCPFKVVSGFLVVPCSGLLFFVAGWFSSSAKLALQRQTL-LSQLPLAK 84
V S+H TP +A+L PF +V C G+L + W + +LA Q+ T+ L ++
Sbjct: 222 VGSLHPTP-VATL-PFLSPHSAVVAFCEGILKYGTAWEALREELAAQKITMTLDEVRERM 279
Query: 83 R--LPSADTDRHSIPLS*PR*VIIQSTE 6
R L D R IP + + + +T+
Sbjct: 280 RNVLSLTDVTRFPIPKNPDAVIFVAATD 307
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITA-SADRHVRLYDPRST 440
+ SS D +++W+ G + I G + + + P+NN+ ++A +A++ + +++ ST
Sbjct: 231 IASSSLDKTIRVWELSRGVCIRVIYGISPQYCIRFHPVNNNFLSAGNANKELTVFN-FST 289
Query: 441 ESIVK 455
I+K
Sbjct: 290 GRIIK 294
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
+GH + C+ + G + SGS D V +W + NHP
Sbjct: 262 KGHHGPVHCVRYAPGGESYTSGSEDGTVRIW---VVGSVNHP 300
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 369 SPLNNSIITASADRHVRLYDPR 434
SP+N+S ++ S DR VRL+D R
Sbjct: 123 SPINDSFMSGSLDRSVRLWDLR 144
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 28 YRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
++GH + L +S + F SGS D +V LW
Sbjct: 110 FKGHKDRVVSLCMSPINDSFMSGSLDRSVRLW 141
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNS-IITASADRHVRLYD 428
+LSS D +++WD + + A N V ++PL+ I+ S D +R+++
Sbjct: 533 LLSSSMDKTVRLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWN 588
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 270 SSGWDHLLKIWDCDLGGIKQEIA 338
SS D LL IWDCD G K E A
Sbjct: 393 SSAEDGLLNIWDCDRVGKKSERA 415
>At2g47010.2 68415.m05873 expressed protein
Length = 451
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 252 GYNTVLSSGWDHLLKIWDCDLGGIKQEI 335
GY T L GW + WD D+GG+ +
Sbjct: 422 GYPTRLGDGWVGDPRTWDLDVGGLSSRL 449
>At2g47010.1 68415.m05872 expressed protein
Length = 451
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 252 GYNTVLSSGWDHLLKIWDCDLGGIKQEI 335
GY T L GW + WD D+GG+ +
Sbjct: 422 GYPTRLGDGWVGDPRTWDLDVGGLSSRL 449
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
N V C+ R + C S S DG AS D V +W+ + E+ P
Sbjct: 499 NEVSCI---RKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTP 546
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
N V C+ R + C S S DG AS D V +W+ + E+ P
Sbjct: 501 NEVSCI---RKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTP 548
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
N V C+ R + C S S DG AS D V +W+ + E+ P
Sbjct: 501 NEVSCI---RKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTP 548
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
N V C+ R + C S S DG AS D V +W+ + E+ P
Sbjct: 501 NEVSCI---RKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTP 548
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHP 156
N V C+ R + C S S DG AS D V +W+ + E+ P
Sbjct: 501 NEVSCI---RKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTP 548
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 360 VDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFS 524
+DWS +N I+T S DR+ ++ E + V+WS + F+
Sbjct: 61 IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFA 115
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +3
Query: 342 NKAFFDVDWSPLNNSIITASADRHVRL--YDPRSTESIVKTTFTSHTGWVQSVRWSKTKT 515
N+A V WSP N S + V + Y+ + + K H V SV W
Sbjct: 99 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNV 158
Query: 516 LFS 524
L +
Sbjct: 159 LLA 161
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 360 VDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFS 524
+DWS +N I+T S DR+ ++ E + V+WS + F+
Sbjct: 61 IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFA 115
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +3
Query: 342 NKAFFDVDWSPLNNSIITASADRHVRL--YDPRSTESIVKTTFTSHTGWVQSVRWSKTKT 515
N+A V WSP N S + V + Y+ + + K H V SV W
Sbjct: 99 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNV 158
Query: 516 LFS 524
L +
Sbjct: 159 LLA 161
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 360 VDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFS 524
+DWS +N I+T S DR+ ++ E + V+WS + F+
Sbjct: 61 IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFA 115
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +3
Query: 342 NKAFFDVDWSPLNNSIITASADRHVRL--YDPRSTESIVKTTFTSHTGWVQSVRWSKTKT 515
N+A V WSP N S + V + Y+ + + K H V SV W
Sbjct: 99 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNV 158
Query: 516 LFS 524
L +
Sbjct: 159 LLA 161
>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
contains Pfam profile: PF00067 cytochrome P450
Length = 512
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 403 ADAVIMLLFRGDQSTSKKALLPAISCLIPPKSQSQIFNK 287
AD +I LLF G+++TSK L PK+ +Q+ +
Sbjct: 307 ADFIINLLFAGNETTSKTMLFAVYFLTHCPKAMTQLLEE 345
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 258 NTVLSSGWDHLLKIWDCDLGGIKQEIAGNKA-FFDVDWSPLNNSIITASADRHVRLYD 428
+T+++ D ++W G +A + V++SP + IIT SAD +R ++
Sbjct: 1033 DTLITGSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWE 1090
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 390 ITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTK 512
I+ S D V+++DP S ++ T HTG V+++ + K
Sbjct: 871 ISGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAISSDRGK 911
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTT 210
RGH+ ++ +S +A G+ A+ D +V +W + +PE + +
Sbjct: 89 RGHESEVKSVSWNASGSLLATCGRDKSVWIW--------------EIQPEEDDEFDTIAV 134
Query: 211 LKGHKEAISGVQWMDT 258
L GH E + V W T
Sbjct: 135 LTGHSEDVKMVLWHPT 150
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTT 210
+ H + L+VS+DG A+G D +V +W E ++ P H T + L
Sbjct: 219 KNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRTREH------VQAFPGHRNTVSCLCF 272
Query: 211 LKGHKEAISG 240
G E SG
Sbjct: 273 RYGTSELYSG 282
>At3g61250.1 68416.m06855 myb family transcription factor (MYB17)
contains PFAM profile: Myb-like DNA-binding domain
PF00249
Length = 299
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 255 YNTVLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLNNSIITASA 404
Y+ V+ + DH L+IW+ ++G + +A SP + + T+SA
Sbjct: 173 YSGVVKTECDHFLRIWNSEIGEAFRNLAPLDESTITSQSPCSRATSTSSA 222
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 RGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
+GH + CL V+ G+ SGS D +C+W
Sbjct: 335 KGHKLAVLCLEVA--GSLVFSGSADKTICVW 363
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 37 HDKGIECLSVSADGNRFASGSWDNNVCLW 123
H + CLS++ + S SWD + +W
Sbjct: 205 HADAVSCLSLNDEQGLLYSASWDRTIKVW 233
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 22 ITYRGHDKGIECLSVS-ADGNRFASGSWDNNVCLWSASLAE 141
I + GH +E L S A+ N FAS S D +V +W L +
Sbjct: 263 IPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGK 303
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 40 DKGIECLSVSADGNRFASGSWDNNVCLWSASLAEEENHPATKK 168
D G C S + G+R A+GS + + ++ +S + T K
Sbjct: 9 DSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSK 51
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 471 HTGWVQSVRWSKTKTLF---SFLLDTTTRFKLWGNQGS 575
H GW+ SV W K F +FL+ TT F LWG+ +
Sbjct: 392 HRGWM-SVAW-KAACFFPGIAFLILTTLNFLLWGSHST 427
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +3
Query: 318 GIKQEIAGNK-AFFDVDWSPLNNSIITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSV 494
G KQE + ++ A + WSP I + SAD + ++D R + +H V
Sbjct: 573 GWKQESSESQSALINQSWSPDGLHISSGSADPVIHIFDIRYNAPSPSLSMKAHKKRVFKA 632
Query: 495 RW-SKTKTLFSFLLDTTTRF-KLW 560
W S L S D KLW
Sbjct: 633 EWHSSYPLLVSISSDLAIGIHKLW 656
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 387 IITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTR 548
+ T S D ++ + + TF SH WV + TL S DTT +
Sbjct: 55 LFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGESTLVSCSSDTTVK 108
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 387 IITASADRHVRLYDPRSTESIVKTTFTSHTGWVQSVRWSKTKTLFSFLLDTTTR 548
+ T S D ++ + + TF SH WV + TL S DTT +
Sbjct: 55 LFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGESTLVSCSSDTTVK 108
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VLSSGWDHLLKIWDCDLGGIKQEIAGNKAFFDVDWSPLN-NSIITASADRHVRLY 425
+LSS D +++WD + + A N + +SP++ N ++ S D +R++
Sbjct: 520 LLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIW 574
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 22 ITYRGHDKGIECLSVSADGNRFASGSWDNNVCLW 123
I +GH K + L+V + G R SGS+D V ++
Sbjct: 171 IQLKGHTKIVSSLAVDSAGARVLSGSYDYTVRMY 204
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 366 WSPLNNSIITASADRHVRLYDPRST 440
+SP +N+++ AS D ++RLYD S+
Sbjct: 21 FSPQSNNLLVASWDSYLRLYDVESS 45
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 366 WSPLNNSIITASADRHVRLYDPRST 440
+SP +N+++ AS D ++RLYD S+
Sbjct: 21 FSPQSNNLLVASWDSYLRLYDVESS 45
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVS-ADGNRFASGSWDNNVCLWSAS 132
+C+ T+ H+ + C++ + D N F SGS D V +W +
Sbjct: 354 ECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVT 393
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 13 DCMITYRGHDKGIECLSVS-ADGNRFASGSWDNNVCLWSAS 132
+C+ T+ H+ + C++ + D N F SGS D V +W +
Sbjct: 354 ECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVT 393
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 190 TRNPLTTLKGHKEAISGVQWMDTTQY 267
T LTTL GHK +++ W+ T+++
Sbjct: 48 TAQILTTLPGHKASVNCTHWLPTSKF 73
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 234 LGCSMDGYNTVLSSGWDHLLKIWDCDLGGIK---QEIAGNKAFFDVDWSPLNNS-IITAS 401
L C+ +LS G DH +IWD K ++A + +SP + + I+T
Sbjct: 318 LDCNPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHKRVVNSAYFSPSSGTKILTTC 377
Query: 402 ADRHVRLYD 428
D +R++D
Sbjct: 378 QDNRIRIWD 386
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 91 SGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTTLKGHKEAISGVQW 249
SGS D +CLW S AT K NP+ +GH+ I V W
Sbjct: 187 SGSQDQRICLWDVSAT------ATDK-------VLNPMHVYEGHQSIIEDVAW 226
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 1 RNSVDCMITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWS 126
R D + +GH I L S+D ASG DN + +W+
Sbjct: 279 RTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWN 320
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 19 MITYRGHDKGIECLSVSADGNRFASGSWDNNVCLWSAS 132
+ T GH + L V +G + SGSWD V LWS S
Sbjct: 620 LCTMSGHKSVVSTLVV-VNGVLY-SGSWDGTVRLWSLS 655
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 4 NSVDCMITYRGHDKGIECLSVS-ADGNRFASGSWDNNVCLWSAS 132
+S +C+ + H + C++ + D N F SGS D V +W S
Sbjct: 393 SSDECIRVF-SHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVS 435
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 VSADGNRFA---SGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTTLKGHKEAI 234
++ADG A G NVC+ E T +S+ E+ + L T++ KEA
Sbjct: 7 MAADGTDSAPANGGLAMENVCVKENGAVSVETVDTTSESQNENSANSSTLDTIEHVKEAA 66
Query: 235 SGVQ 246
G Q
Sbjct: 67 EGTQ 70
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 VSADGNRFA---SGSWDNNVCLWSASLAEEENHPATKKSKPEHGTTRNPLTTLKGHKEAI 234
++ADG A G NVC+ E T +S+ E+ + L T++ KEA
Sbjct: 7 MAADGTDSAPANGGLAMENVCVKENGAVSVETVDTTSESQNENSANSSTLDTIEHVKEAA 66
Query: 235 SGVQ 246
G Q
Sbjct: 67 EGTQ 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,073
Number of Sequences: 28952
Number of extensions: 320089
Number of successful extensions: 1506
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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