Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30705
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 103  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 225
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 475 FPRWRQRGSVW 507
           FPRWRQ  ++W
Sbjct: 653 FPRWRQTLAMW 663


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 475 FPR-WRQRGSVWDP 513
           +P+ W Q  +VWDP
Sbjct: 94  YPKIWEQLRAVWDP 107


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 191 CKSESPW*APVGSMPC 144
           C +E PW    G  PC
Sbjct: 351 CVNERPWSLYCGEPPC 366


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 367 PRDTTQRVLSSLTRSSM 417
           PR+ T+  LSSL + S+
Sbjct: 34  PREATKITLSSLAKGSL 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,827
Number of Sequences: 336
Number of extensions: 2758
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)