Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30704
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   1.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.2  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 208 CLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRH 318
           C P G       P  LHT   + S  +   S+ I+RH
Sbjct: 56  CTPDGAELKRHLPDALHTECSKCSETQKNGSKKIMRH 92


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 169 LPRGPCSVPGRPSCLPRGPCSV 234
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 169 LPRGPCSVPGRPSCLPRGPCSV 234
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 254 STLLHSATPRLNLSRPKTSSVMTSPRLSNTP 346
           +TL ++      + RPK++S+   P + N P
Sbjct: 258 TTLKNNRASPYPMQRPKSASLSPPPHVYNPP 288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,194
Number of Sequences: 336
Number of extensions: 1730
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)