Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30704
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    28   1.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.4  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   7.8  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 187 SVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHDQ----PQTIQYA 345
           SVP   S +   P   P  PS + T P  YS+  SVSSQ  + H      PQ+ +Y+
Sbjct: 282 SVPSALSSISSTPFMKPSIPSTIPTIPSAYSA--SVSSQPPLTHSYVHPGPQSHKYS 336


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 431  GRVLTICPSSQKSELTKLRRLPNPKYGYNYFSKLD 535
            GR+  I P   +S+L +LRR    KYG ++ S +D
Sbjct: 1531 GRIGVITP--YRSQLHELRRAFKVKYGKSFMSTID 1563


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 254 STLLHSATPRLNLSRPKTSSVMTSPRLSNTPL 349
           ST+ H    RLN+   + S+   SP   N PL
Sbjct: 172 STIPHMTAERLNILLDEISTAYASPTSINEPL 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,497
Number of Sequences: 5004
Number of extensions: 27546
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)