Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30704
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 33 0.12
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 31 0.85
03_02_0198 + 6344952-6347483 31 0.85
01_05_0214 - 19362812-19363477 30 1.1
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.0
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 2.6
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 3.4
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845... 28 4.6
04_03_0799 - 19805190-19805749,19806316-19806403 28 6.0
02_04_0413 + 22681957-22682035,22682253-22682788 28 6.0
01_05_0624 + 23772613-23774671,23774737-23775596 28 6.0
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 8.0
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 27 8.0
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Frame = +1
Query: 133 PRCQARCCYPCSLP------RGPCSVPGRPSC-LP-RGPCSVPGRPSC 252
P C C PCS P RG C P P C LP PC +P P C
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPC 154
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 139 CQARCCYPCSLP-RGPCSVPGRPSCLPRG 222
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 252
HC P P P C C C G C+ P P C G CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>03_02_0198 + 6344952-6347483
Length = 843
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 163 CSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQN 306
CSLP C V G SC P G CS P C + S+E +N
Sbjct: 296 CSLPHDACDVYG--SCGPFGVCSNATNPECRCPAGFEPRSSEEWRLEN 341
>01_05_0214 - 19362812-19363477
Length = 221
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 163 CSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
C LP P P +PS P P P P+ L TSPL A+ + I
Sbjct: 29 CPLPLSPPYSPAQPSPPPTSP---PASPTLLPTSPLSDDHADHTTDSLI 74
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 187 SVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQ 303
SVPG+PS + P S+ GRP SP +S + Q
Sbjct: 352 SVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQ 390
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVS 297
P P P PS P P PG P+ TSP ++ S S
Sbjct: 1566 PTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYS 1607
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVS 297
P P P PG P+ P P P PS TSP ++ S S
Sbjct: 1576 PSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1621
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 11 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 130
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>08_02_1436 +
27083698-27084111,27084333-27084416,27084502-27084551,
27084676-27084724,27085471-27085545,27085724-27085837
Length = 261
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 190 VPGRPSCLPRGPCSVPGRPSCLHTSPLRY 276
+PG P P+G S PGRP +SP+ +
Sbjct: 221 IPG-PLAFPKGLTSAPGRPRVAPSSPVMF 248
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +1
Query: 106 HCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 252
HC P P C + C G C+ P C G CS+ +C
Sbjct: 124 HCCPAPPKPKPKPCECTHHCGGHGGGCNKPAVSPC--GGGCSISDGGAC 170
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +1
Query: 109 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGRP----SCLPRGPCSVP 237
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 118 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSTQYYD 11
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 163 CSLPRGPCSVPGRPSCLPRG-PCSVP-GRP 246
C+ P+ PCSVPG LP G C P RP
Sbjct: 322 CADPKYPCSVPGTCHNLPGGFECLCPRSRP 351
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +1
Query: 172 PRGPCSVP--GRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHDQPQTIQYA 345
P P S P RPS PR S P SP S A S Q + ++++
Sbjct: 27 PPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVASPPPTIPVKFS 86
Query: 346 APVA 357
P A
Sbjct: 87 PPAA 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,117
Number of Sequences: 37544
Number of extensions: 230247
Number of successful extensions: 742
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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