Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30704
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 40 0.001
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.66
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 4.7
SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03) 28 4.7
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 4.7
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 28 6.2
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 28 6.2
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16) 27 8.2
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 27 8.2
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 121 PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESV 294
PA AP A+ YP +P P VPG P+ P P VPG P+ + P + + SV
Sbjct: 869 PAQAPGYPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSSV 927
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 FPKHCAP*PASAPRCQARCC-YPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTS 264
+P PA P A+ YP P P VPG P+ +P P VP S + S
Sbjct: 875 YPAQAPGYPAQVPGYPAQVPGYPAQAPGCPAQVPGYPAQVPGYPAQVPAGSSVQYVS 931
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPS 249
P P PG P+ P P VPG P+
Sbjct: 866 PGNPAQAPGYPAQAPGYPAQVPGYPA 891
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP--LRYSSAESVSSQNIVRHDQPQT 333
P ++ PC+V P + PC+V P + SP +++S S V+H P T
Sbjct: 103 PYTVQHSPCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQH-SPYT 161
Query: 334 IQYAAPVAK 360
+Q++ A+
Sbjct: 162 VQHSPYTAQ 170
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 121 PASAPRCQARCC--YPCSLPRGPCSVPGRPSCLPRG-PCSVPGRPS 249
P+ AP CC YP P P + P +P+ PR P + P P+
Sbjct: 507 PSCAPTYSPSCCGSYPAPQPPSPPAPPPKPAPPPRSPPAAAPCNPA 552
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 133 PRC-QARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQ 303
P C Q RCC ++P+GP P P + + P +P P + +P+ A Q
Sbjct: 441 PICIQHRCCN-ANMPQGPPPPPPPPPQMYQQPLMMPQAPMMMPQAPMMMPQAPMTMQQ 497
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Frame = +1
Query: 133 PRCQAR--CCY---PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYS 279
PRC C Y PC PC RP C PC RP P RY+
Sbjct: 183 PRCYTLRPCRYMLRPCRYMLRPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRYT 236
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRY 276
PC PC RP C PC RP P RY
Sbjct: 169 PCRYTLRPCRYTLRPRCYTLRPCRYMLRPCRYMLRPCRY 207
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 151 CCY---PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYS 279
CCY PC PC RP PC RP P RY+
Sbjct: 212 CCYTLRPCRYMLRPCRYTLRPCRYTLRPCRYTLRPCRYTLRPCRYT 257
>SB_3877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPSCLPRGPCSVP 237
+ C LP C +P CLP C +P
Sbjct: 27 HKCGLPYNECGLPYNKCCLPYTNCGLP 53
>SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 52 TSGCSRALLSR*SRFFPK-HCAP*PASAPRCQARCCYPCS 168
TS SRA L F P HCA S PRC AR P S
Sbjct: 18 TSPLSRAALRAYKAFHPVLHCALYKCSTPRCIARYTSPPS 57
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 154 CYPCSLPRGPCSVPGRPSCLPRGPCSVPG-RPSCLHT 261
C C++PR C++P LP C++P P C T
Sbjct: 846 CMMCAIPRVICAIPRVMYALPCVMCAIPRVIPPCAST 882
>SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03)
Length = 435
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
P LP P +PG P LP P +PG P L P
Sbjct: 213 PGVLPGLPGVLPGLPGVLPALPGVLPGLPGVLPALP 248
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 154 CYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
C P LP P +PG P LP P +P P L P
Sbjct: 204 CLPGVLPGLPGVLPGLPGVLPGLPGVLPALPGVLPGLP 241
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
P LP P +PG P LP P +PG P L P
Sbjct: 199 PGVLPCLPGVLPGLPGVLPGLPGVLPGLPGVLPALP 234
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 124 ASAPRCQARCCY--PCSLPRGPCSVPGRPSCLPRGPC 228
AS + A C Y PCS G CSV G +C PC
Sbjct: 2 ASCLQVTATCSYGNPCS-NGGSCSVDGSETCSNSNPC 37
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 100 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHT 261
P+ C+ + C ++C C P G RG C PG+ SC H+
Sbjct: 770 PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ--------DRGKCVDPGQCSCYHS 815
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 100 PKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHT 261
P+ C+ + C ++C C P G RG C PG+ SC H+
Sbjct: 71 PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ--------DRGKCVDPGQCSCYHS 116
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 133 PRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
P QAR Y L GP ++PG P +P+ + PG + SP
Sbjct: 339 PTPQARWIYQEELCTGPETIPG-PEMIPKSTPTDPGTRNDTEESP 382
>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
Length = 561
Score = 27.5 bits (58), Expect = 8.2
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Frame = +1
Query: 31 GRGVESWTSGCSRALLSR*SRFFPKHCAP*-PASAPRCQARCCYPC-SLPRG---PCSVP 195
G V S C F PK AP P +AP CY C S P G C
Sbjct: 392 GTTVLSCAQQCCEGNQCNNETFIPKPPAPPGPTNAPLQ----CYVCNSGPEGVMNSCDKA 447
Query: 196 GRPSCLPRGPCSVPGRPSCL 255
+C P GP VP C+
Sbjct: 448 KLETCQPYGPAPVPRPDRCM 467
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 32 VAVSKAGLLAAPVHYSPAEAVSSQS 106
VAV K+ L +P PA AVSSQS
Sbjct: 1081 VAVDKSSWLGSPPFLLPARAVSSQS 1105
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 154 CYPCSLPR-GPCSVPGRPSCLPRGPCSVPGRPSCL 255
C C P C +PG SC P G S PG PS L
Sbjct: 478 CASCPPPGCASCPLPGCASCQPPGCASCPG-PSRL 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,071
Number of Sequences: 59808
Number of extensions: 243224
Number of successful extensions: 868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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