Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30704
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 33 0.11
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 33 0.14
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 33 0.14
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.14
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.19
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.19
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 33 0.19
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 32 0.25
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.44
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 31 0.58
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 31 0.77
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 31 0.77
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 1.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 1.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 1.0
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 1.8
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 1.8
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen pro... 29 3.1
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.1
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 4.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 4.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 4.1
Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 28 5.4
U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in bl... 28 5.4
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 27 7.2
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 7.2
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 27 9.5
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 9.5
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 9.5
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 27 9.5
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 9.5
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 27 9.5
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +1
Query: 115 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
P P AP +CC R PC R C P G C GRP C + +P
Sbjct: 146 PPPPPAPEAPTQCCGSQPYGRTPC----RSGC-PNGDCGC-GRPCCYYQNP 190
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +1
Query: 139 CQARCCY---PCSLPRGPCSVPGRPSCLPR-GPCSVPGRPSC 252
C + CC P L P P +P C P GPC P P+C
Sbjct: 56 CSSSCCSSQKPIPLACCPPPPPPKPCCQPAFGPC-CPATPNC 96
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 270 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 329
Query: 310 V 312
V
Sbjct: 330 V 330
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 271 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 330
Query: 310 V 312
V
Sbjct: 331 V 331
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 186 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 245
Query: 310 V 312
V
Sbjct: 246 V 246
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 245
Query: 310 V 312
V
Sbjct: 246 V 246
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 245
Query: 310 V 312
V
Sbjct: 246 V 246
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+LP P + SC C P C + + +S +
Sbjct: 410 APVCQQQCAPQCTLPSAPACQQCQTSCQQTQQCHQQCIPQCQQPAAPQCQQCQSACQSPV 469
Query: 310 V 312
V
Sbjct: 470 V 470
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGP-CSVPGRPSCLHTSPLRYSSAESVSSQN 306
AP CQ +C C+LP P + SC P C P C + + +S
Sbjct: 309 APVCQQQCAPQCTLPSAPVCQQCQTSCQQFAPVCQEQCAPQCQQPAAPQCQQCQSACQSP 368
Query: 307 IV 312
++
Sbjct: 369 VI 370
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGP-------CSVPGRPSCLPRGP-CSVPGRPSCLHTSPLRY 276
PA P+CQ C C + P C++ +P+C P C P C S +
Sbjct: 198 PAQCPQCQQTCHRQCVQQQFPVQQCTQQCTLECQPTCQQAVPQCQQQCAPQCQQPSAPQC 257
Query: 277 SSAES------VSSQNIVRHDQPQTIQYAAP 351
+S V+ Q I PQ Q AP
Sbjct: 258 QQCQSACQSPVVAPQIITLEVVPQCQQQCAP 288
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 115 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPG--RPSCLHTSPL 270
P P P C C P +P P V G P C GP P P+C +P+
Sbjct: 59 PPPCFGPACPPPCFGPACVPLAPIIVNGPPPCF--GPACPPPCFGPACAPPAPI 110
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 115 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPG--RPSCLHTSPL 270
P P P C C P P P V G P C GP P P+C ++P+
Sbjct: 87 PPPCFGPACPPPCFGPACAPPAPIIVNGPPPCF--GPACPPPCFGPACAPSAPI 138
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPG--RPSCLHTSP 267
P P P C C P P P V G P C GP P P+C P
Sbjct: 115 PPPCFGPACPPPCFGPACAPSAPIIVNGPPPCF--GPACPPPCFGPACAPPPP 165
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/61 (24%), Positives = 22/61 (36%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP CQ +C C+ P P + SC C P C + + +S +
Sbjct: 186 APVCQQQCAPQCTFPSAPACQQCQTSCQQTQQCQQQCIPQCQQPAAPQCQQCQSACQSPV 245
Query: 310 V 312
V
Sbjct: 246 V 246
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/70 (22%), Positives = 23/70 (32%)
Frame = +1
Query: 127 SAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQN 306
+AP CQ +C C P + SC C P C S + +S
Sbjct: 272 AAPVCQQQCAPQCQQQSAPACQQCQTSCQQTQQCQQQCTPQCQQPSAPQCQQCQSACQAP 331
Query: 307 IVRHDQPQTI 336
+ PQ +
Sbjct: 332 VATTAAPQAV 341
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/70 (22%), Positives = 23/70 (32%)
Frame = +1
Query: 127 SAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQN 306
+AP CQ +C C P + SC C P C S + +S
Sbjct: 272 AAPVCQQQCAPQCQQQSAPACQQCQTSCQQTQQCQQQCTPQCQQPSAPQCQQCQSACQAP 331
Query: 307 IVRHDQPQTI 336
+ PQ +
Sbjct: 332 VATTAAPQVV 341
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPR----GPCSVPGRPSCLHTSP 267
P++ +C+ CC P P GP VPG+P R G VPG+P P
Sbjct: 94 PSANLQCEG-CCLPG--PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEP 143
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPR----GPCSVPGRPSCLHTSP 267
P++ +C+ CC P P GP VPG+P R G VPG+P P
Sbjct: 94 PSANLQCEG-CCLPG--PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEP 143
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 121 PASAPRCQARC---CYPCSLPRGPCSV-PGRPSCLPRGPCSVPGRPSCLHT 261
P+ AP+CQ C C +L + P PSC P+ C +PSC+ T
Sbjct: 648 PSCAPQCQPACDPQCISFTLKLPVMTTPPPTPSCQPQ--CQPACQPSCMET 696
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 249
P PR PC P R C P G C G S
Sbjct: 1925 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 1954
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 148 RCCYPCSL-PRGP--CSVPGRPSCLPRG 222
+C YP S P P C V R CLPRG
Sbjct: 976 QCAYPGSCNPNDPMSCDVRKRQQCLPRG 1003
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 249
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 148 RCCYPCSL-PRGP--CSVPGRPSCLPRG 222
+C YP S P P C V R CLPRG
Sbjct: 1560 QCAYPGSCNPNDPMSCDVRKRQQCLPRG 1587
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 249
P PR PC P R C P G C G S
Sbjct: 1925 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 1954
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 148 RCCYPCSL-PRGP--CSVPGRPSCLPRG 222
+C YP S P P C V R CLPRG
Sbjct: 976 QCAYPGSCNPNDPMSCDVRKRQQCLPRG 1003
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 249
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 148 RCCYPCSL-PRGP--CSVPGRPSCLPRG 222
+C YP S P P C V R CLPRG
Sbjct: 1560 QCAYPGSCNPNDPMSCDVRKRQQCLPRG 1587
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGPCSVPGRPS 249
P PR PC P R C P G C G S
Sbjct: 2509 PSPPPRHPCQDPERNDCHPAGTCRATGAQS 2538
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 148 RCCYPCSL-PRGP--CSVPGRPSCLPRG 222
+C YP S P P C V R CLPRG
Sbjct: 1560 QCAYPGSCNPNDPMSCDVRKRQQCLPRG 1587
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGPCSVPGRP-----SCLPRGPCSVPGRPSCLHTSPLRYSSA 285
P + P + P S P PC PG+P C VPG P +H+S +
Sbjct: 41 PCAVPSSNSVIWLPASRP--PCLHPGQPIIHWPDLSDNLACPVPGLPDSVHSSQISLLEG 98
Query: 286 ES--VSSQNIVRHDQPQTIQY 342
E ++ + I D P Y
Sbjct: 99 EGLLLTKERICFFDGPIDFHY 119
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGPCSVPGRP-----SCLPRGPCSVPGRPSCLHTSPLRYSSA 285
P + P + P S P PC PG+P C VPG P +H+S +
Sbjct: 41 PCAVPSSNSVIWLPASRP--PCLHPGQPIIHWPDLSDNLACPVPGLPDSVHSSQISLLEG 98
Query: 286 ES--VSSQNIVRHDQPQTIQY 342
E ++ + I D P Y
Sbjct: 99 EGLLLTKERICFFDGPIDFHY 119
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Frame = +1
Query: 121 PASAPRCQARCCYPCSLPRGPCSVPGRP-----SCLPRGPCSVPGRPSCLHTSPLRYSSA 285
P + P + P S P PC PG+P C VPG P +H+S +
Sbjct: 41 PCAVPSSNSVIWLPASRP--PCLHPGQPIIHWPDLSDNLACPVPGLPDSVHSSQISLLEG 98
Query: 286 ES--VSSQNIVRHDQPQTIQY 342
E ++ + I D P Y
Sbjct: 99 EGLLLTKERICFFDGPIDFHY 119
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 115 P*PASAPRCQARCCYPCSLPRGPCSVPG-RPS-CLPRGPCSVPGR 243
P P SAP C C +P PC P RP+ C+ P VP R
Sbjct: 154 PPPPSAPAC----CVAAPVPTNPCCQPAPRPAPCVCSAPRPVPCR 194
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Frame = +1
Query: 109 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPS------CLPRGPCSVPGRPSC 252
C P P AP CC P P PC P P C + P VP P C
Sbjct: 100 CGPSPVPAP-----CCPPPPAPAAPCCPPPPPPTPSPLVCCKQAP--VPENPCC 146
>AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen
protein 46 protein.
Length = 302
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 142 QARCCYPCSLPRGPCSVPGRPSCLP--RGPCSVPGRPSCLHTS-PLRYSS 282
++R C C P+GP +PGR LP +G PG P+ L P+ Y S
Sbjct: 94 RSRVC-ECRHPQGPPGIPGRDG-LPGTKGSEGAPGLPARLPCEPPVNYKS 141
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 193 PGRPSCLPRGPCSVPGRPSCLHTS 264
P +P C PRGP PGRP TS
Sbjct: 98 PAKPRC-PRGPPGPPGRPGQRGTS 120
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 154 CYPCSLPRGPCSVPGRPSCLPRGP--CSVPGRP 246
C PC P+GP VPG P P P + GRP
Sbjct: 168 CLPC--PQGPAGVPGHPG-FPGDPGEYGIGGRP 197
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 ASAPRCQARCCYPCSL-PRGPCSVPGRPSCLPRGPCSVPGRP 246
ASA C A CC P + P G PGRP P P +PG P
Sbjct: 91 ASAGGCDA-CCLPGAAGPAGTPGKPGRPG-KPGAP-GLPGNP 129
>Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical
protein W09C5.5 protein.
Length = 722
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 136 RCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSP 267
RC C P P + P RP LP P + G P ++P
Sbjct: 139 RCSNAARNNCGAPGAPGAQPSRPPILPPIPTTPTGFPVAALSTP 182
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 95 KRLQRESSAREQPEVQLSTPRPKHT 21
+++QRE+ REQ Q S P P HT
Sbjct: 548 QQVQRENLNREQYSTQSSQPHPPHT 572
>U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 3 protein.
Length = 242
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/55 (27%), Positives = 19/55 (34%)
Frame = +1
Query: 127 SAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAES 291
SAP CQ +C C P + SC C P C S + +S
Sbjct: 94 SAPVCQQQCAPQCQQQFAPACQQCQNSCQQTQQCQQQCTPQCQQPSTPQCQQCQS 148
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCL-PRGPCSVPGRPSCL 255
AP C C P G PG P PRGP + G+P L
Sbjct: 129 APPPGTNACQKC--PTGAPGPPGLPGPKGPRGPAGIEGKPGRL 169
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGP-CSVPGRPSCLHTSPLRYSSAESVSSQN 306
AP CQ +C C++ P + +C P C P C S + +S
Sbjct: 185 APVCQQQCAPQCTISSAPQCQQCQTTCQQFAPVCQQQCAPQCQQPSAPQCQQCQSACQSP 244
Query: 307 IV 312
+V
Sbjct: 245 VV 246
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSC 252
YP S + C +P C P PC +P P C
Sbjct: 627 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCC 660
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSC 252
YP S + C +P C P PC +P P C
Sbjct: 272 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCC 305
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSC 252
YP S + C +P C P PC +P P C
Sbjct: 224 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCC 257
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPS--CLPRGPCSVPGRPSC 252
YP S + C +P C P PC +P P C
Sbjct: 952 YPQSYQQPSCGCQPQPQNCCAPPAPCCLPTIPCC 985
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/61 (24%), Positives = 21/61 (34%)
Frame = +1
Query: 130 APRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNI 309
AP C+ +C C P P + SC C P C S + +S +
Sbjct: 423 APVCEQQCAPQCYQPSAPQCQQCQASCQQTQQCQQQCIPQCQQPSAPQCQQCQSACQFPV 482
Query: 310 V 312
V
Sbjct: 483 V 483
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 154 CYPCSLPRGPCSVPGRPSCLPRGP--CSVPGRP 246
C PC P+GP VPG P P P + GRP
Sbjct: 168 CLPC--PQGPRGVPGHPG-FPGDPGEYGIGGRP 197
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 109 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 252
C P P AP + P P P PG P P+ PC P C
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPC 148
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 109 CAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGRPSC 252
C P P AP + P P P PG P P+ PC P C
Sbjct: 103 CQPGPQGAPGAPGKPGRP-GKPGAP-GFPGNPGKAPQKPCEEITPPPC 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,190
Number of Sequences: 27780
Number of extensions: 173299
Number of successful extensions: 787
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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