Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30704
(569 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31850.3 68414.m03915 dehydration-responsive protein, putativ... 31 0.72
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ... 31 0.72
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ... 31 0.72
At4g19120.2 68417.m02822 early-responsive to dehydration stress ... 29 2.9
At4g19120.1 68417.m02821 early-responsive to dehydration stress ... 29 2.9
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly... 27 6.7
At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4 fa... 27 8.8
At1g62780.1 68414.m07086 expressed protein 27 8.8
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 27 8.8
At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 27 8.8
>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHD 321
P PC V P G S+P P LH +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHD 321
P PC V P G S+P P LH +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHD 321
P PC V P G S+P P LH +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At4g19120.2 68417.m02822 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHD 321
P PC V P S P P LHT+P R S + N+ +HD
Sbjct: 377 PLRPCVVVPSPKLKKTDLESTPKWPERLHTTPERISDVPG-GNGNVFKHD 425
>At4g19120.1 68417.m02821 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 172 PRGPCSVPGRPSCLPRGPCSVPGRPSCLHTSPLRYSSAESVSSQNIVRHD 321
P PC V P S P P LHT+P R S + N+ +HD
Sbjct: 377 PLRPCVVVPSPKLKKTDLESTPKWPERLHTTPERISDVPG-GNGNVFKHD 425
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Frame = +1
Query: 136 RCQARCCYPCSLPRGPC----SVPGRPSCLPRGPCSVPGRPSCL 255
RC + CY C + G C +P RP P P P C+
Sbjct: 283 RCGHKFCYRCGVQAGGCKHGHGLPPRPPPPPPSPPPTPVNICCI 326
>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein identical to Probable
FKBP-type peptidyl-prolyl cis-trans isomerase 2,
chloroplast precursor (Ppiase) (Rotamase)
(SP:O22870)[Arabidopsis thaliana]; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 223
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 160 PCSLPRGPCSVPGRPSCLPRGP 225
P + P+G S PGRP P P
Sbjct: 184 PLAFPKGLVSAPGRPRVAPNSP 205
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 190 VPGRPSCLPRGPCSVPGRPSCLHTSPL 270
+PG P P+G S PGRP SP+
Sbjct: 181 IPG-PLAFPKGLVSAPGRPRVAPNSPV 206
>At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4
family protein contains Pfam profile PF05132: RNA
polymerase III RPC4
Length = 295
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 269 SATPRLNLSRPKTSSVMTSPRLSNTPLL*P 358
S TP + + RPKT + +SP ++ P L P
Sbjct: 4 SRTPNMFIRRPKTETKASSPEVAFQPSLSP 33
>At1g62780.1 68414.m07086 expressed protein
Length = 237
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 119 HGAQCFGKKRLQRESSAREQPEVQLSTPRPKHTVLR 12
H A+ K+RL+R+S ARE + QL + + LR
Sbjct: 45 HIARLEFKRRLERDSEAREAFQKQLREEKERRQALR 80
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +1
Query: 157 YPCSLPRGPC----SVPGRPSCLPRGPCSVPGRPSCLHTSP 267
YPC P G C S+P L G C P SCL + P
Sbjct: 7 YPCD-PEGVCMRCKSMPPPEESLTCGTCVTPWHVSCLLSPP 46
>At1g29080.1 68414.m03560 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 346
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 157 YPCSLPRGPCSVPGRPSCLPRGPCSVP 237
YP + GPC RP+ L RG +VP
Sbjct: 217 YPYQVKEGPCRSNARPAILIRGFENVP 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,989,762
Number of Sequences: 28952
Number of extensions: 160521
Number of successful extensions: 503
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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