Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30701
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   4.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +3

Query: 234 QPYPVHVQW--SNLSMY 278
           +PYPV+ QW    LSMY
Sbjct: 261 RPYPVYNQWWSGPLSMY 277


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 511  FKNLIGCESKP 479
            FKNL GCE  P
Sbjct: 2170 FKNLCGCEEYP 2180


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 210 QYVKVPIPQPYPVHVQWSNLSMYLFIRLSTKLLKNQYRTRSKNQCPMKSKSLI 368
           QY++  +   Y V V   NLS +L  R     L    R+   N     S +++
Sbjct: 171 QYLRSTLSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHLCNWGSANSTNIV 223


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 210 QYVKVPIPQPYPVHVQWSNLSMYLFIRLSTKLLKNQYRTRSKNQCPMKSKSLI 368
           QY++  +   Y V V   NLS +L  R     L    R+   N     S +++
Sbjct: 331 QYLRSTLSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHLCNWGSANSTNIV 383


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 210 QYVKVPIPQPYPVHVQWSNLSMYLFIRLSTKLLKNQYRTRSKNQCPMKSKSLI 368
           QY++  +   Y V V   NLS +L  R     L    R+   N     S +++
Sbjct: 331 QYLRSTLSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHLCNWGSANSTNIV 383


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,276
Number of Sequences: 336
Number of extensions: 4561
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)